View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415Ase25 (Length: 598)
Name: NF0415Ase25
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415Ase25 |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 7 - 590
Target Start/End: Original strand, 25274264 - 25274847
Alignment:
| Q |
7 |
taatgattgattattagtcttttaactttggtatagtttataaaaatgaatcttagttactttgagagattagtctacacacttgtacacatgacatatc |
106 |
Q |
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| T |
25274264 |
taatgattgattagtagtcttttaactttgttatagtttataaaaatgaatcttagttactttgagagattagtctccacagttgtacacatgatatatc |
25274363 |
T |
|
| Q |
107 |
ttaggctacaaaataaaccgattttatctgtaatgaagcagaataagttattttgattttataatgcagccacttaaaaaatcaaccatttaccccttat |
206 |
Q |
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| T |
25274364 |
ttaggctacaaaataaattgattttatctctaatgaagcagaataagttattttgattttataatgcagccacttaaaaaatcaaccatttaccccttat |
25274463 |
T |
|
| Q |
207 |
tgattaacaattttcaagtataacttttccttttccaacattgtttttgcaggattaagaggaatgcaaaatgttcaccatggaaccatttcatcatctg |
306 |
Q |
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| T |
25274464 |
tgattaacaattttcaagtataacttttccttttccaactttgtttttgcaggattaagaggaaagcaaaatgttcaccatggaaccatttcaacatctg |
25274563 |
T |
|
| Q |
307 |
ttgtcatcatggtacttctcgcactcatccatatcactaccctcatactcaaagtaaaaatgagctgagacatcaaagcaacaatccttcatattctatt |
406 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25274564 |
ttgtcatcatggtacttctcacactcatccatgtcactaccctcatactcaaagtaaatatgagctgagacatcaaagcaacaatccttcatattctatt |
25274663 |
T |
|
| Q |
407 |
ttacaagcatgttgtcaacaaccactcaaatccaaaatattcaagtttagacattataagaggtttaaagaacaccaacaatgttgataaaagcatcgac |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25274664 |
ttacaagcatgttgtcaacaaccactcaaatccaaaatattcaagtttagacattataagaggtttaaagaacaccaacaatgttgataaaagcatcgac |
25274763 |
T |
|
| Q |
507 |
cataatttcgcgtagaagtttgtgaaacaatgaaggatcgaaaaaacaagcaaatcatcaaaactgcagttaatgatgcgacat |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25274764 |
cataatttcgcgtagaagtttgtgaaacaatgaaggatcaaaaaaacaagcaaatcatcaaaactgtagttaatgatgcgacat |
25274847 |
T |
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