View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0415Ase28 (Length: 492)

Name: NF0415Ase28
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0415Ase28
NF0415Ase28
[»] chr3 (9 HSPs)
chr3 (204-450)||(50914587-50914834)
chr3 (273-394)||(52653521-52653641)
chr3 (319-385)||(2257449-2257515)
chr3 (297-373)||(33709591-33709668)
chr3 (120-197)||(33709777-33709853)
chr3 (344-392)||(23686024-23686072)
chr3 (344-392)||(24058261-24058309)
chr3 (108-176)||(40574397-40574463)
chr3 (107-163)||(52653754-52653808)
[»] chr5 (6 HSPs)
chr5 (273-392)||(36202865-36202983)
chr5 (266-384)||(11043017-11043134)
chr5 (283-392)||(29006219-29006330)
chr5 (108-176)||(29006452-29006518)
chr5 (120-167)||(9851536-9851583)
chr5 (289-387)||(28274093-28274193)
[»] chr8 (3 HSPs)
chr8 (267-393)||(12729139-12729264)
chr8 (266-363)||(28696326-28696422)
chr8 (108-162)||(12729372-12729424)
[»] chr2 (4 HSPs)
chr2 (267-392)||(34681343-34681467)
chr2 (297-372)||(14219159-14219233)
chr2 (334-383)||(14891311-14891362)
chr2 (107-167)||(14218968-14219026)
[»] chr4 (11 HSPs)
chr4 (268-392)||(24129587-24129710)
chr4 (283-387)||(20251151-20251255)
chr4 (283-386)||(48780120-48780222)
chr4 (298-387)||(122833-122922)
chr4 (266-362)||(1495015-1495110)
chr4 (120-206)||(48779953-48780038)
chr4 (266-358)||(1516574-1516664)
chr4 (315-362)||(1533134-1533180)
chr4 (339-368)||(965378-965407)
chr4 (342-387)||(19226769-19226816)
chr4 (120-200)||(24129436-24129515)
[»] chr7 (4 HSPs)
chr7 (268-386)||(12239867-12239983)
chr7 (283-392)||(1840400-1840509)
chr7 (282-365)||(34091726-34091808)
chr7 (266-387)||(24533161-24533281)
[»] chr6 (2 HSPs)
chr6 (268-387)||(28612390-28612506)
chr6 (106-176)||(28612227-28612295)
[»] chr1 (6 HSPs)
chr1 (319-393)||(49053553-49053627)
chr1 (331-392)||(49061134-49061195)
chr1 (106-161)||(49061355-49061409)
chr1 (288-376)||(50059269-50059357)
chr1 (108-189)||(17458366-17458444)
chr1 (106-161)||(49053775-49053829)
[»] scaffold0007 (2 HSPs)
scaffold0007 (298-392)||(217509-217603)
scaffold0007 (302-386)||(215646-215730)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 204 - 450
Target Start/End: Original strand, 50914587 - 50914834
Alignment:
Q  204 atttttctgcaaagtgcctttattcatggagaaaccttatgtccctttagtgaagnnnnnnn-cctttggaagagtttgtttcatgaatggttgcattgc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  50914587 atttttctgcaaagtgcctttattcatggagaaaccttatgtccctttagtgaagagaaaaaacctttggaagagtttgtttcatgaatggttgcattgc 50914686  T
Q  303 ttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatttctctaacaaaacgcctata 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50914687 ttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatttctctaacaaaacgcctata 50914786  T
Q  403 aataagagaaatacaattcataccagtctcacaaacaaatttctaatt 450  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  50914787 aataagagaaatacaattcataccagtctcacaaacaaatttttaatt 50914834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 52653641 - 52653521
Alignment:
Q  273 aagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatat 372  Q
    ||||||||||| ||||||||||| |||||| ||||||||||| || ||||||||| | ||||||||| | ||||||| |||||||||||| |||||||||    
T  52653641 aagagtttgtt-catgaatggttacattgcatcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaatatat 52653543  T
Q  373 tttgaaaatttctctaacaaaa 394  Q
    |||| |||||||||| ||||||    
T  52653542 tttggaaatttctctcacaaaa 52653521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 2257449 - 2257515
Alignment:
Q  319 tacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatttct 385  Q
    |||| |||| ||||||| ||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  2257449 tacatcttttctctaaatggtctctatttaagcattgcaacttttcaaatatatttttgaaatttct 2257515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 373
Target Start/End: Complemental strand, 33709668 - 33709591
Alignment:
Q  297 cattgcttcaattgtcaagcattacacc--tttactctaaaaggtctctatttaaccattgcaacttttcaaatatatt 373  Q
    ||||||||||||||| ||||||||||||  |||  | |||||||||||| |||||||||||||||||| ||||||||||    
T  33709668 cattgcttcaattgtaaagcattacaccttttttttataaaaggtctct-tttaaccattgcaactttccaaatatatt 33709591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 33709853 - 33709777
Alignment:
Q  120 agagaaaagaaagaatgatttagtataaattttggcagaatttagactgccaagaattttgatgttctatctcttttt 197  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||  | |||| | |||| ||||||||||||||    
T  33709853 agagaaaagaaagaatgatttagtataattttcggcaaaatttagactcaccagaa-tgtgatattctatctcttttt 33709777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 23686072 - 23686024
Alignment:
Q  344 atttaaccattgcaacttttcaaatatattttgaaaatttctctaacaa 392  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||    
T  23686072 atttaaccattgcaactttccaaatatattttggaaatttctctcacaa 23686024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 24058309 - 24058261
Alignment:
Q  344 atttaaccattgcaacttttcaaatatattttgaaaatttctctaacaa 392  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||    
T  24058309 atttaaccattgcaactttccaaatatattttggaaatttctctcacaa 24058261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 40574397 - 40574463
Alignment:
Q  108 ctcgtgcactagagagaaaagaaagaatgatttagtataaattttggcagaatttagactgccaagaat 176  Q
    ||||||||||||||  |||||||||||||||||| ||| | ||| |||||||||| ||||  |||||||    
T  40574397 ctcgtgcactagag--aaaagaaagaatgatttaatattattttcggcagaattttgactcacaagaat 40574463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 52653808 - 52653754
Alignment:
Q  107 cctcgtgcactagagagaaaagaaagaatgatttagtataaattttggcagaattta 163  Q
    ||||||||||||||||  |||| |||||||||||||||||| |||  ||||||||||    
T  52653808 cctcgtgcactagaga--aaagtaagaatgatttagtataattttcagcagaattta 52653754  T

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Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 273 - 392
Target Start/End: Complemental strand, 36202983 - 36202865
Alignment:
Q  273 aagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatat 372  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  36202983 aagagtttgtt-catgaatggttacattgattcaattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgcaacttttcaaatatat 36202885  T
Q  373 tttgaaaatttctctaacaa 392  Q
    ||| ||||||||||| ||||    
T  36202884 tttaaaaatttctctcacaa 36202865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 266 - 384
Target Start/End: Original strand, 11043017 - 11043134
Alignment:
Q  266 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttca 365  Q
    |||||| ||||||||||| ||||||||| |  |||| || ||| | ||| |||||||||||| ||||||||| ||| |||||||||  || |||||||||    
T  11043017 cctttgaaagagtttgtt-catgaatggctagattgattaaatggacaaacattacaccttttctctaaaagatctttatttaaccgatgaaacttttca 11043115  T
Q  366 aatatattttgaaaatttc 384  Q
    |||||||||||||||||||    
T  11043116 aatatattttgaaaatttc 11043134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 392
Target Start/End: Complemental strand, 29006330 - 29006219
Alignment:
Q  283 ttcatgaatggttgcattgcttcaattgtcaagcattacacctttact---ctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaa 379  Q
    ||||||||||||| |||||||||||| || || |||||||| |||  |   ||||||| ||||| |||||  ||||||||||||||| ||||||||| ||    
T  29006330 ttcatgaatggttacattgcttcaatcgtaaaacattacacttttttttttctaaaagatctct-tttaattattgcaacttttcaattatattttggaa 29006232  T
Q  380 atttctctaacaa 392  Q
    |||||||| ||||    
T  29006231 atttctctcacaa 29006219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 29006518 - 29006452
Alignment:
Q  108 ctcgtgcactagagagaaaagaaagaatgatttagtataaattttggcagaatttagactgccaagaat 176  Q
    ||||||||||||| |  |||||| |||||||||||||||| |||| ||||||||||||||  |||||||    
T  29006518 ctcgtgcactagaaa--aaagaatgaatgatttagtataatttttagcagaatttagactcacaagaat 29006452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 9851536 - 9851583
Alignment:
Q  120 agagaaaagaaagaatgatttagtataaattttggcagaatttagact 167  Q
    |||||||||||||| ||||||||||| | |||||||||||||| ||||    
T  9851536 agagaaaagaaagactgatttagtattatttttggcagaattttgact 9851583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 387
Target Start/End: Original strand, 28274093 - 28274193
Alignment:
Q  289 aatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaa--tatattttgaaaatttctc 386  Q
    ||||||| ||||| |||||| |||||||| |||| | || | |||||||||   |||| ||||||||||||||| ||||  ||||||||| || ||||||    
T  28274093 aatggttacattgtttcaatagtcaagcaatacatcgtttcactaaaaggttcatattcaaccattgcaactttccaaatttatattttggaagtttctc 28274192  T
Q  387 t 387  Q
    |    
T  28274193 t 28274193  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 267 - 393
Target Start/End: Complemental strand, 12729264 - 12729139
Alignment:
Q  267 ctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaa 366  Q
    |||| |||||||||| | |||||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  12729264 ctttagaagagtttgct-catgaatggttatattgcttcaattgtcgagcattacaccttttctctaaaaggtctctatttaaccattgcaactttccaa 12729166  T
Q  367 atatattttgaaaatttctctaacaaa 393  Q
    |||||||||| |||||||||| |||||    
T  12729165 atatattttggaaatttctctcacaaa 12729139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 363
Target Start/End: Original strand, 28696326 - 28696422
Alignment:
Q  266 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaactttt 363  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| |||||||||| ||||||||||||||    
T  28696326 cctttagaagagtttgtt-catgaatggttacattgcttcaattgttaagcattacacattttctctaaaagatctctatttacccattgcaactttt 28696422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 12729424 - 12729372
Alignment:
Q  108 ctcgtgcactagagagaaaagaaagaatgatttagtataaattttggcagaattt 162  Q
    |||||||||||||||  ||||||||||| ||||||||||| ||| ||||||||||    
T  12729424 ctcgtgcactagaga--aaagaaagaattatttagtataattttcggcagaattt 12729372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 267 - 392
Target Start/End: Original strand, 34681343 - 34681467
Alignment:
Q  267 ctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaa 366  Q
    |||| |||||||||||| ||| ||||||  |||||||||||||||||| |||||||| ||| ||||||||||| | | ||||||||||||||| || |||    
T  34681343 cttttgaagagtttgtt-catcaatggtaacattgcttcaattgtcaaacattacactttttctctaaaaggtttatgtttaaccattgcaacattccaa 34681441  T
Q  367 atatattttgaaaatttctctaacaa 392  Q
    ||||||||||||||||||||| ||||    
T  34681442 atatattttgaaaatttctctcacaa 34681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 14219159 - 14219233
Alignment:
Q  297 cattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatat 372  Q
    ||||||||||||||| ||||||| ||| ||| ||||||| | | |||||||||| |||||||| ||||||||||||    
T  14219159 cattgcttcaattgtaaagcattgcacattttctctaaa-gatttctatttaactattgcaacatttcaaatatat 14219233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 14891362 - 14891311
Alignment:
Q  334 aaaggtctctatttaaccattgcaacttttcaaa--tatattttgaaaattt 383  Q
    |||||||||||||||| |||| ||||||||||||  ||||||||||||||||    
T  14891362 aaaggtctctatttaagcatttcaacttttcaaaattatattttgaaaattt 14891311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 14218968 - 14219026
Alignment:
Q  107 cctcgtgcactagagagaaaagaaagaatgatttagtataaattttggcagaatttagact 167  Q
    |||||||||||||||  |||||||||||||||||||||| | |||| ||| ||||| ||||    
T  14218968 cctcgtgcactagag--aaaagaaagaatgatttagtattatttttagcataattttgact 14219026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 392
Target Start/End: Original strand, 24129587 - 24129710
Alignment:
Q  268 tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaa 367  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||||| ||| |||| | || |||||||||||||| |||||  |||    
T  24129587 tttggaagagtttgtt-catgaatggttacattgcttcaattatcaagcaatacacctttcctccaaaaagcctatatttaaccattgcgactttctaaa 24129685  T
Q  368 tatattttgaaaatttctctaacaa 392  Q
    |||||||||| ||||||||| ||||    
T  24129686 tatattttgataatttctctcacaa 24129710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 283 - 387
Target Start/End: Complemental strand, 20251255 - 20251151
Alignment:
Q  283 ttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatt 382  Q
    ||||||||| ||| ||||| ||||||| |||| || ||||| ||| ||||||||| |||||||||||| ||||||||||| |||||||||||| ||||||    
T  20251255 ttcatgaatagttacattgtttcaattatcaaacaatacactttttctctaaaagatctctatttaacaattgcaactttccaaatatattttaaaaatt 20251156  T
Q  383 tctct 387  Q
    |||||    
T  20251155 tctct 20251151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 283 - 386
Target Start/End: Original strand, 48780120 - 48780222
Alignment:
Q  283 ttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatt 382  Q
    ||||||||| |||  ||||||||||||||||| ||||| |||||| ||||||||| ||| | ||||| |||||||||||| |||||||||||||||||||    
T  48780120 ttcatgaatagttatattgcttcaattgtcaaacattataccttttctctaaaagatct-tgtttaatcattgcaactttccaaatatattttgaaaatt 48780218  T
Q  383 tctc 386  Q
    ||||    
T  48780219 tctc 48780222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 122922 - 122833
Alignment:
Q  298 attgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatttctct 387  Q
    |||| ||||||||||||||| ||||| ||| |||||||| || |||||||||| |||||||||||||||||||| |||| ||||||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttcaaatatactttggaaatttctct 122833  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 1495015 - 1495110
Alignment:
Q  266 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt 362  Q
    |||||| |||| |||  |||||||||||||  |||||||||| ||| |||| |||||||||| ||||||| ||||||| ||||||||||||||||||    
T  1495015 cctttgaaagaattttgttcatgaatggttatattgcttcaactgtaaagctttacaccttttctctaaatggtctct-tttaaccattgcaacttt 1495110  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 48779953 - 48780038
Alignment:
Q  120 agagaaaagaaagaatgatttagtataaattttggcagaatttagactgccaagaattttgatgttctatctctttttctttcaatt 206  Q
    |||||||| || |||||||||| ||| | ||| |  |||||||||| || ||||||| | |||||||||||||||||||||||||||    
T  48779953 agagaaaataatgaatgatttaatattattttcgatagaatttagaatgacaagaatgt-gatgttctatctctttttctttcaatt 48780038  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 1516574 - 1516664
Alignment:
Q  266 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaa 358  Q
    |||||| |||| |||||| |||||||||||  ||||| ||| || | ||||| ||||||||| |||||||| |||||| ||||||||||||||    
T  1516574 cctttgaaagattttgtt-catgaatggttatattgcgtcatttctaaagcactacaccttttctctaaaatgtctct-tttaaccattgcaa 1516664  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 1533134 - 1533180
Alignment:
Q  315 gcattacacctttactctaaaaggtctctatttaaccattgcaacttt 362  Q
    ||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  1533134 gcattacaccttttctctaataggtctct-tttaaccattgcaacttt 1533180  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Complemental strand, 965407 - 965378
Alignment:
Q  339 tctctatttaaccattgcaacttttcaaat 368  Q
    ||||||||||||||||||||||||||||||    
T  965407 tctctatttaaccattgcaacttttcaaat 965378  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 387
Target Start/End: Original strand, 19226769 - 19226816
Alignment:
Q  342 ctatttaaccattgcaacttttcaa--atatattttgaaaatttctct 387  Q
    ||||||||||||||||||||| |||  |||||||||| ||||||||||    
T  19226769 ctatttaaccattgcaactttccaaatatatattttggaaatttctct 19226816  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 24129436 - 24129515
Alignment:
Q  120 agagaaaagaaagaatgatttagtataaattttggcagaatttagactgccaagaattttgatgttctatctctttttctt 200  Q
    ||||||||||||||| |||||||||| | ||||| | |||||||||||  ||| || | |||||||||||||  |||||||    
T  24129436 agagaaaagaaagaaagatttagtattatttttgacggaatttagactcacaa-aaatgtgatgttctatctaattttctt 24129515  T

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Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 268 - 386
Target Start/End: Original strand, 12239867 - 12239983
Alignment:
Q  268 tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaa 367  Q
    |||| ||||||||||| ||||||||||| |||||| |||||||||||||| ||||| ||| | ||||||||||| | ||||||||||||||| |||||||    
T  12239867 tttgaaagagtttgtt-catgaatggttacattgcatcaattgtcaagcaatacactttttcactaaaaggtctttctttaaccattgcaac-tttcaaa 12239964  T
Q  368 tatattttgaaaatttctc 386  Q
    ||||||||| |||||||||    
T  12239965 tatattttggaaatttctc 12239983  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 392
Target Start/End: Complemental strand, 1840509 - 1840400
Alignment:
Q  283 ttcatgaatggttgcattgcttcaattgtcaagcattacacc-tttactctaaaaggtctctatttaaccattgcaacttttcaaa--tatattttgaaa 379  Q
    ||||||||||||| || | ||| |||| ||||| |||||||| ||||||  ||||||||||| || ||||||||||||||||||||  |||||||| |||    
T  1840509 ttcatgaatggttacaatacttgaattatcaagaattacaccatttact--aaaaggtctctctt-aaccattgcaacttttcaaatttatattttaaaa 1840413  T
Q  380 atttctctaacaa 392  Q
    ||| |||| ||||    
T  1840412 attactctcacaa 1840400  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 34091726 - 34091808
Alignment:
Q  282 tttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttca 365  Q
    ||||||||||| || || | |||||||| |||| |||||||| |||  | |||||||||| ||||||||||||| |||||||||    
T  34091726 tttcatgaatgattacactacttcaattatcaaacattacacatttttt-taaaaggtctttatttaaccattgtaacttttca 34091808  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 387
Target Start/End: Complemental strand, 24533281 - 24533161
Alignment:
Q  266 cctttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactct-aaaaggtctctatttaaccattgcaacttttc 364  Q
    |||||| ||| ||||||| ||||||||||| ||||||| ||||||| || |||||||  ||| |||| ||||  ||||||||||||||  ||||| || |    
T  24533281 cctttgaaagtgtttgtt-catgaatggttacattgctacaattgttaaacattacatattttctctaaaaaaatctctatttaaccaccgcaac-ttcc 24533184  T
Q  365 aaatatattttgaaaatttctct 387  Q
     |||||| |||| ||||||||||    
T  24533183 caatatactttgcaaatttctct 24533161  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 268 - 387
Target Start/End: Original strand, 28612390 - 28612506
Alignment:
Q  268 tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaa 367  Q
    |||||||||||||||| ||||||| |||  ||||||||||||||||| || ||||||||| |||||||||| ||||||||||||||| |||  ||| |||    
T  28612390 tttggaagagtttgtt-catgaattgttatattgcttcaattgtcaaacaatacacctttgctctaaaaggcctctatttaaccattacaa--ttttaaa 28612486  T
Q  368 tatattttgaaaatttctct 387  Q
    ||||||||| ||||||||||    
T  28612487 tatattttggaaatttctct 28612506  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 28612227 - 28612295
Alignment:
Q  106 ccctcgtgcactagagagaaaagaaagaatgatttagtataaattttggcagaatttagactgccaagaat 176  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||| |||||||||| ||||  |||||||    
T  28612227 ccctcgtgcactagagataa--gaaagaatgatttagtataattttcggcagaatttcgactcacaagaat 28612295  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 49053627 - 49053553
Alignment:
Q  319 tacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatttctctaacaaa 393  Q
    ||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |||||    
T  49053627 tacaccttttcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaaa 49053553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 49061195 - 49061134
Alignment:
Q  331 ctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatttctctaacaa 392  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| ||||    
T  49061195 ctaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaa 49061134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 49061409 - 49061355
Alignment:
Q  106 ccctcgtgcactagagagaaaagaaagaatgatttagtataaatttt-ggcagaatt 161  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||| |||||||||    
T  49061409 ccctcgtgcactagaga--aaagaaagaatgatttagtataatttttcggcagaatt 49061355  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 376
Target Start/End: Complemental strand, 50059357 - 50059269
Alignment:
Q  288 gaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttg 376  Q
    |||||||| ||||||||  ||  ||||||||||||||| | | ||| || ||||||||||||| | ||||| |||| ||||||||||||    
T  50059357 gaatggttacattgctttgatgttcaagcattacacctcttcactataatgtctctatttaacgactgcaattttttaaatatattttg 50059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 17458444 - 17458366
Alignment:
Q  108 ctcgtgcactagagagaaaagaaagaatgatttagtataaattttggcagaatttagactgccaagaattttgatgttctat 189  Q
    |||||||||||||||  || ||||||||||||||||||  ||||||| ||||||| ||||  | |||| |||||||||||||    
T  17458444 ctcgtgcactagaga--aatgaaagaatgatttagtattgattttggaagaattttgacttacgagaa-tttgatgttctat 17458366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 49053829 - 49053775
Alignment:
Q  106 ccctcgtgcactagagagaaaagaaagaatgatttagtataa-attttggcagaatt 161  Q
    |||||||||||||||||  | |||||||||||||||||||||  |||||||||||||    
T  49053829 ccctcgtgcactagaga--agagaaagaatgatttagtataattttttggcagaatt 49053775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 217603 - 217509
Alignment:
Q  298 attgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatttctctaacaa 392  Q
    |||||||  ||||||||| ||||| | ||| ||||||||| |||||||||||||||||||||||||  | ||||||| | |||||||||| ||||    
T  217603 attgctttgattgtcaagaattacgcattttctctaaaagatctctatttaaccattgcaacttttttattatatttcggaaatttctctcacaa 217509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 215730 - 215646
Alignment:
Q  302 cttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatttctc 386  Q
    ||||||| ||||| |||||||  ||| ||  ||||| ||||||||||||||||||||||||  |||||||||||| |||||||||    
T  215730 cttcaatcgtcaaacattacatattttcttcaaaagatctctatttaaccattgcaactttctaaatatattttggaaatttctc 215646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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