View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0415Ase5 (Length: 618)
Name: NF0415Ase5
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415Ase5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 9 - 590
Target Start/End: Complemental strand, 2926002 - 2925421
Alignment:
| Q |
9 |
gacacactaccaacatgaaattttgtttgtaatcagaaattccataagctatcattggctgcaagtccagtagaacctggtgacaaatcttgatacccag |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2926002 |
gacacactaccaacaagaaattttgtttgtaatcagaaattccagaagctatcattggctgcaagtccagtagaagctggtgacaaatcttgatacccag |
2925903 |
T |
|
| Q |
109 |
accacctttgagacatgtcatttccatataccacagatgagatatcagcatccgcatcaaattctctccgaaacgaaaattcttgggagaagaaaaagtt |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
2925902 |
accacctttgaaacatgtcatttccatataccacagatgagatatcagcatccgcatcaaattctctcccaaacgaaaactcttgggagaagaaaaagtt |
2925803 |
T |
|
| Q |
209 |
tgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaagggtaaacatccatttgttttgaagaagatgagatgttcaag |
308 |
Q |
| |
|
||| ||||||||| ||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
2925802 |
tgaagaattcccggccattgaggttaggttgggatcagccactgttgctccagctaaagggtaaacatccatttgttttgaagacgatgaaatgttcaag |
2925703 |
T |
|
| Q |
309 |
atacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttctctgattgatttacattggtgaatgaattgaactcatttgagaaatcag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2925702 |
atacttgtttcattgttatgaacaatgttgtcatattgtgtttttggtttctctgattgatttggattggtgaatgaattgaactcatttgagaaatcag |
2925603 |
T |
|
| Q |
409 |
gaatagtgatttgattttcactattgtatggngaaaattccaaaaatggaggcaatagagatgctgcattagtatttgttggtccttctctagaggagtt |
508 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
2925602 |
gaatagtgattttattttcactattgtagggagaaaattccaaaaatggagcccatagagatgctgcattagtatttgatggttcttctctagaggagtt |
2925503 |
T |
|
| Q |
509 |
agaccttccaagttttgaaccattcattttgtttccacaattacgcttctcaaagactctagtgacaacccattcactctac |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2925502 |
agaccttccaagttttgaaccattcattttctttccacaattacgcttctcaaagactctagtgacaacccattcactctac |
2925421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 9 - 371
Target Start/End: Complemental strand, 2920617 - 2920255
Alignment:
| Q |
9 |
gacacactaccaacatgaaattttgtttgtaatcagaaattccataagctatcattggctgcaagtccagtagaacctggtgacaaatcttgatacccag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2920617 |
gacacactaccaacatgaaattttgtttgtaatcagaaattccagaagctatcattggctgcaagtccagtagaagctggtgacaaatcttgatacccag |
2920518 |
T |
|
| Q |
109 |
accacctttgagacatgtcatttccatataccacagatgagatatcagcatccgcatcaaattctctccgaaacgaaaattcttgggagaagaaaaagtt |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||| |||||||||| |
|
|
| T |
2920517 |
accacctttgaaacatgtcatttccatataccacagatgagatatcagcatccgcatcaaattctctcccaaaagaaaactctcggg---agaaaaagtt |
2920421 |
T |
|
| Q |
209 |
tgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaaggg---taaacatccatttgttttgaagaagatgagatgttc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
2920420 |
tgatgaattcccgaccattgaggtttggttggaatcagcaactgttccttcagcgaaagggttataaacatccatttgttttgaagaggatgaaatgttc |
2920321 |
T |
|
| Q |
306 |
aagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttctctgattgattt |
371 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
2920320 |
aagatacaagtttcattgttatgaacaatgttgtcatcttgtgtttttgatttctctgattgattt |
2920255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 454 - 590
Target Start/End: Complemental strand, 2920244 - 2920111
Alignment:
| Q |
454 |
atggaggcaatagagatgctgcattagtatttgttggtccttctctagaggagttagaccttccaagttttgaaccattcattttgtttccacaattacg |
553 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2920244 |
atggaggcaatagagttgc---attagtatttgatggtccttctctagaggagttagaccttccaagttttgaaccattcattttgtttccacaattacg |
2920148 |
T |
|
| Q |
554 |
cttctcaaagactctagtgacaacccattcactctac |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2920147 |
cttctcaaagactctagtgacaacccattcactctac |
2920111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 200 - 590
Target Start/End: Complemental strand, 9447837 - 9447470
Alignment:
| Q |
200 |
gaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaaggg---taaacatccatttgttttgaagaagat |
296 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
9447837 |
gaaaaagtttgatgaattcccgacaattgaggtttggttggaataagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggat |
9447738 |
T |
|
| Q |
297 |
gagatgttcaag----atacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttctctgattgatttacattggtgaatgaattgaac |
392 |
Q |
| |
|
|| ||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
9447737 |
gaaatgttcaagatatatactagtttcattgttatgaacaatgttgtcgtcttgtgtttttggtttctctatttgatttggattggtgaatgaattcaac |
9447638 |
T |
|
| Q |
393 |
tcatttgagaaatcaggaatagtgatttgattttcactattgtatggngaaaattccaaaaatggaggcaatagagatgctgcattagtatttgttggtc |
492 |
Q |
| |
|
||| |||||||||| || ||||| ||| ||| | ||||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
9447637 |
acatgagagaaatcagaaacagtga------------------ctggagaataatccaacaatggaggcaatagaga---tgcattagtatttgatggtc |
9447559 |
T |
|
| Q |
493 |
cttctctagaggagttagaccttccaagttttgaaccattcattttgtttccacaattacgcttctcaaagactctagtgacaacccattcactctac |
590 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9447558 |
cttctc---------tagacctttcaagttttgaaccgttcattttctttccacaattacgcttctcaaagactctagtgacaaccctttcactctac |
9447470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 206 - 417
Target Start/End: Complemental strand, 29272460 - 29272246
Alignment:
| Q |
206 |
gtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaagggt---aaacatccatttgttttgaagaagatgagatg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |
|
|
| T |
29272460 |
gtttgatgaattcccgaccattgaggtttggttggaatcagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggatgaaatg |
29272361 |
T |
|
| Q |
303 |
ttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttctctgattgatttacattggtgaatgaattgaactcatttgaga |
402 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||| ||| ||| |||| |
|
|
| T |
29272360 |
ttcaagatactagtttcattgttgtgaacaatgttgtcatcttgtgtttttggtttctctatttgatttggattggtgaatgaattcaacacatgagaga |
29272261 |
T |
|
| Q |
403 |
aatcaggaatagtga |
417 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
29272260 |
aatcagaaatagtga |
29272246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 590
Target Start/End: Complemental strand, 29272172 - 29272137
Alignment:
| Q |
555 |
ttctcaaagactctagtgacaacccattcactctac |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
29272172 |
ttctcaaagactctagtgacaacccattcactctac |
29272137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 188 - 359
Target Start/End: Original strand, 31357597 - 31357768
Alignment:
| Q |
188 |
ttcttgggagaagaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaagggtaaacatccatttgtttt |
287 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| | || ||||||||||||| |||||||||| ||||||| |
|
|
| T |
31357597 |
ttcttgagagaagaaaaagtttgacgaattcccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccaattgtttt |
31357696 |
T |
|
| Q |
288 |
gaagaagatgagatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttc |
359 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
31357697 |
gaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
31357768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 189 - 359
Target Start/End: Original strand, 31346938 - 31347108
Alignment:
| Q |
189 |
tcttgggagaagaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaagggtaaacatccatttgttttg |
288 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||||| | || ||||||||||||| ||||||||||||||||||| |
|
|
| T |
31346938 |
tcttgagagaagaaaaagtttgacgaatttccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccatttgttttg |
31347037 |
T |
|
| Q |
289 |
aagaagatgagatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttc |
359 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
31347038 |
aagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
31347108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 399 - 590
Target Start/End: Original strand, 31357781 - 31357969
Alignment:
| Q |
399 |
gagaaatcaggaatagtgatttgattttcactattgtatggngaaaattccaaaaatggaggcaatagagatgctgcattagtatttgttggtccttctc |
498 |
Q |
| |
|
|||||||||| || |||| |||| ||||||||||||||||| ||| | ||||| ||| |||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
31357781 |
gagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattc---attagtatttgatggtccttctc |
31357877 |
T |
|
| Q |
499 |
tagaggagttagaccttccaagttttgaaccattcattttgtttccacaattacgcttctcaaagactctagtgacaacccattcactctac |
590 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| | |||| ||||||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
31357878 |
tagaggagttaaaccttccatgttttgaaccatcctttttctttccacaatttttcttctcaaagactctactgagaacccattcactctac |
31357969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 399 - 590
Target Start/End: Original strand, 31347121 - 31347309
Alignment:
| Q |
399 |
gagaaatcaggaatagtgatttgattttcactattgtatggngaaaattccaaaaatggaggcaatagagatgctgcattagtatttgttggtccttctc |
498 |
Q |
| |
|
|||||||||| || |||| |||| ||||||||||||||||| ||| | ||||| ||| |||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
31347121 |
gagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattc---attagtatttgatggtccttctc |
31347217 |
T |
|
| Q |
499 |
tagaggagttagaccttccaagttttgaaccattcattttgtttccacaattacgcttctcaaagactctagtgacaacccattcactctac |
590 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||| | |||| ||| ||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
31347218 |
tagaggagttaaaccttccatgttttgaaacatcctttttctttgcacaatttttcttctcaaagactctactgagaacccattcactctac |
31347309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 31357371 - 31357515
Alignment:
| Q |
16 |
taccaacatgaaattttgtttgtaatcagaaattccataagctatcattggctgcaagtccagtagaacctggtgacaaatcttgatacccagaccacct |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||| |||||||||| ||||||| | | ||| || | |
|
|
| T |
31357371 |
taccagcatgaaattttgtttgtaatcagaaattccacaagctatcattgaccacatgtccagtagaagctggtgacaattcttgattctctgacaactt |
31357470 |
T |
|
| Q |
116 |
ttgagacatgtcatttccatataccacagatgagatatcagcatc |
160 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31357471 |
ttgaaacatgccatttccatataccacagatgagatatcagcatc |
31357515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 31346692 - 31346843
Alignment:
| Q |
9 |
gacacactaccaacatgaaattttgtttgtaatcagaaattccataagctatcattggctgcaagtccagtagaacctggtgacaaatcttgatacccag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||| ||| ||||| ||||||| |||| |
|
|
| T |
31346692 |
gacacactaccaacatgaaattttgtttgtaatcagaaattcttcaagctatcattgaccacatgtccagtagaagctgatgacagttcttgattcccaa |
31346791 |
T |
|
| Q |
109 |
accacctttgagacatgtcatttccatataccacagatgagatatcagcatc |
160 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
31346792 |
accacctttgaagcatgccatttccatataccacagatgagatatcatcatc |
31346843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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