View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415Ase8 (Length: 827)
Name: NF0415Ase8
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415Ase8 |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: scaffold0079 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 10 - 702
Target Start/End: Original strand, 47911 - 48604
Alignment:
| Q |
10 |
gaatccactgccattcacccaaagataattaaattcatgtgtataagccaaatgcacnnnnnnnttg-aaagaaacaatatatatgtttagcattatacc |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
47911 |
gaatccactgccattcacccaaagataattaaattcatgtgtataagccaaatgcacaaaaaaattgaaaagaaacaatatatttgtttagcattatacc |
48010 |
T |
|
| Q |
109 |
ttcatgtaaatagcatcagcactaggaaccgacacgaacatgtctcctccaacatgggtgataccatcaaaattaggggccgttgaaaccacatgaggca |
208 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48011 |
ttcatgtaaatagcatcagcactaggaactgacacgaacatgtctcctccaacatgggtgataccatcaaaattaggggccgttgaaaccacatgaggca |
48110 |
T |
|
| Q |
209 |
aatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgatacccccaccaacatcaaccaaagacttaatttggtt |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48111 |
aatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgatacccccaccaacatcaaccaaagacttaatttggtt |
48210 |
T |
|
| Q |
309 |
aaacccgtctttgtatccagcaataacagccctcgacacaattctagcggtgcaaaccataccttggttgaataagtcattgtattttgagtccaacccc |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48211 |
aaacccgtctttgtatccagcaataacagccctcgacacaattctagcggtgcaaaccataccttggttgaacaagtcattgtattttgagtccaacccc |
48310 |
T |
|
| Q |
409 |
gtcatttcaaattgttcatgaccatgacacctaaagaaagcagtgccatttttggtgccttcttttataatttcactaataaagttagcagggttcaaat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48311 |
gtcatttcaaattgttcatgaccatgacacctaaagaaagcagtgccatttttggtgccttcttttataatttcactaataaagttagcagggttcaaat |
48410 |
T |
|
| Q |
509 |
gaaaagggtgattctctagcaacaacattggtgccaatgtcatttttgtgtcttgtaggatccatttcgatgcacgtgtcaggccataaagaatttcgcc |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
48411 |
gaaaagggtgattctctagcaacaacattggtgccaatgtcatttttgtgtcttgtaggatccatttcgatgcacgtgtcaagccatagagaatttcgcc |
48510 |
T |
|
| Q |
609 |
ggtttctgatttttctgcactgaaaatctttctacgaaccataactctcattactcttaaaagtagagtggaatcaggggagggtgcatcttca |
702 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48511 |
ggtttctgatttttctgcactgaaaatctttctacgaaccatgactctcattactcttaaaagtagagtggaatcaggggagggtgcatcttca |
48604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 10 - 702
Target Start/End: Complemental strand, 16344950 - 16344257
Alignment:
| Q |
10 |
gaatccactgccattcacccaaagataattaaattcatgtgtataagccaaatgcacnnnnnnnttg-aaagaaacaatatatatgtttagcattatacc |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
16344950 |
gaatccactgccattcacccaaagataattaaattcatgtgtataagccaaatgcacaaaaaaattgaaaagaaacaatatatttgtttagcattatacc |
16344851 |
T |
|
| Q |
109 |
ttcatgtaaatagcatcagcactaggaaccgacacgaacatgtctcctccaacatgggtgataccatcaaaattaggggccgttgaaaccacatgaggca |
208 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16344850 |
ttcatgtaaatagcatcagcactaggaactgacacgaacatgtctcctccaacatgggtgataccatcaaaattaggggccgttgaaaccacatgaggca |
16344751 |
T |
|
| Q |
209 |
aatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgatacccccaccaacatcaaccaaagacttaatttggtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16344750 |
aatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgatacccccaccaacatcaaccaaagacttaatttggtt |
16344651 |
T |
|
| Q |
309 |
aaacccgtctttgtatccagcaataacagccctcgacacaattctagcggtgcaaaccataccttggttgaataagtcattgtattttgagtccaacccc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16344650 |
aaacccgtctttgtatccagcaataacagccctcgacacaattctagcggtgcaaaccataccttggttgaacaagtcattgtattttgagtccaacccc |
16344551 |
T |
|
| Q |
409 |
gtcatttcaaattgttcatgaccatgacacctaaagaaagcagtgccatttttggtgccttcttttataatttcactaataaagttagcagggttcaaat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16344550 |
gtcatttcaaattgttcatgaccatgacacctaaagaaagcagtgccatttttggtgccttcttttataatttcactaataaagttagcagggttcaaat |
16344451 |
T |
|
| Q |
509 |
gaaaagggtgattctctagcaacaacattggtgccaatgtcatttttgtgtcttgtaggatccatttcgatgcacgtgtcaggccataaagaatttcgcc |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
16344450 |
gaaaagggtgattctctagcaacaacattggtgccaatgtcatttttgtgtcttgtaggatccatttcgatgcacgtgtcaagccatagagaatttcgcc |
16344351 |
T |
|
| Q |
609 |
ggtttctgatttttctgcactgaaaatctttctacgaaccataactctcattactcttaaaagtagagtggaatcaggggagggtgcatcttca |
702 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16344350 |
ggtttctgatttttctgcactgaaaatctttctacgaaccatgactctcattactcttaaaagtagagtggaatcaggggagggtgcatcttca |
16344257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 102 - 702
Target Start/End: Complemental strand, 35868 - 35268
Alignment:
| Q |
102 |
ttataccttcatgtaaatagcatcagcactaggaaccgacacgaacatgtctcctccaacatgggtgataccatcaaaattaggggccgttgaaaccaca |
201 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||| | || || || |||||||| ||| |
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| T |
35868 |
ttataccttgatgtaaatagcatcagcactaggaatagaaacaaacatgtctcctccaacatgggtgatgccatcatacttgggtgctgttgaaacaaca |
35769 |
T |
|
| Q |
202 |
tgaggcaaatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgatacccccaccaacatcaaccaaagacttaa |
301 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||||| |||||| |||||||||| || | |||||||||||||| ||||||||||||||||| | | || |
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|
| T |
35768 |
tgaggcaaatcaaaattaataccttggatatgagggtaagctttaacaatctcagacatcgatcctccgataccgccaccaacatcaaccaatgtttgaa |
35669 |
T |
|
| Q |
302 |
tttggttaaacccgtctttgtatccagcaataacagccctcgacacaattctagcggtgcaaaccataccttggttgaataagtcattgtattttgagtc |
401 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||| || |||||| || || |||||| | |||| ||| || || |||||| |||||| ||| |
|
|
| T |
35668 |
tttggttaaatccatctttgtatccagcaataacagctctaaacacaaatccagttgtgcaagcttgtcctttgttaaacaactcattgaattttgggtc |
35569 |
T |
|
| Q |
402 |
caaccccgtcatttcaaattgttcatgaccatgacacctaaagaaagcagtgccatttttggtgccttcttttataatttcactaataaagttagcaggg |
501 |
Q |
| |
|
|| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||| |||| |
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|
| T |
35568 |
cacactagccatttcaaattggtcataaccatgacacctaaagaaagcagtgccattttttgtgccttcttttacaatatcactcataaagttaaaaggg |
35469 |
T |
|
| Q |
502 |
ttcaaatgaaaagggtgattctctagcaacaacattggtgccaatgtcatttttgtgtcttgtaggatccatttcgatgcacgtgtcaggccataaagaa |
601 |
Q |
| |
|
|||| ||||| |||||| |||||||||| | || |||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||| || |||| |
|
|
| T |
35468 |
ttcatatgaattgggtgagtctctagcaataccaatggtgccaatgttacttttgtgtcttgtagaatccatttcgatgcacgtgtcaagccgtagagaa |
35369 |
T |
|
| Q |
602 |
tttcgccggtttctgatttttctgcactgaaaatctttctacgaaccataactctcattactcttaaaagtagagtggaatcaggggagggtgcatcttc |
701 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| |
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|
| T |
35368 |
tttcgccggtttctgatttttctgcgctgaaaatctttctacgaaccatcactctcattactcttaaaaggagcgtggaatcaggagagggtgcatcttc |
35269 |
T |
|
| Q |
702 |
a |
702 |
Q |
| |
|
| |
|
|
| T |
35268 |
a |
35268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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