View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0415_high_2 (Length: 612)
Name: NF0415_high_2
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Original strand, 23134642 - 23135127
Alignment:
| Q |
16 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23134642 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
23134741 |
T |
|
| Q |
116 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23134742 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
23134841 |
T |
|
| Q |
216 |
gtttttggcacgtgcggttcaggggtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23134842 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
23134941 |
T |
|
| Q |
316 |
ccatggcgtcatgtctgcgacgtttcgtgtctttaggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggcc |
415 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23134942 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggcc |
23135041 |
T |
|
| Q |
416 |
agnnnnnnnnnctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
502 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23135042 |
ag-ttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
23135127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Complemental strand, 11895238 - 11894753
Alignment:
| Q |
16 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11895238 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttagaatgggggtggcgagcatgaaact |
11895139 |
T |
|
| Q |
116 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11895138 |
tgaattcgggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
11895039 |
T |
|
| Q |
216 |
gtttttggcacgtgcggttcaggggtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11895038 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
11894939 |
T |
|
| Q |
316 |
ccatggcgtcatgtctgcgacgtttcgtgtctttaggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggcc |
415 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11894938 |
ccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggcc |
11894839 |
T |
|
| Q |
416 |
agnnnnnnnnnctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
502 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894838 |
ag-ttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
11894753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Complemental strand, 20282939 - 20282454
Alignment:
| Q |
16 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282939 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgggggtggcgagcatgaaact |
20282840 |
T |
|
| Q |
116 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282839 |
tgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggtt |
20282740 |
T |
|
| Q |
216 |
gtttttggcacgtgcggttcaggggtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282739 |
gtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtgg |
20282640 |
T |
|
| Q |
316 |
ccatggcgtcatgtctgcgacgtttcgtgtctttaggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggcc |
415 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20282639 |
ccatggtgtcatgtctacgatgtttcgtgtctttgggcacttgaaggatgcatctctggacaataatggggcgtgactggttatttggaaggggtaggcc |
20282540 |
T |
|
| Q |
416 |
agnnnnnnnnnctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
502 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282539 |
ag-ttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
20282454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 132 - 386
Target Start/End: Original strand, 14655859 - 14656113
Alignment:
| Q |
132 |
tcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgggttgtttttggcacgtgcg |
231 |
Q |
| |
|
||||||||| ||||||||| | ||||| |||||| |||| ||||||| ||||||||||||||| ||||||| ||||| |||||||| |||||||||| |
|
|
| T |
14655859 |
tcaggtgtttgattattgataacaatgggaacatttttttgagcttcattagtggtagtttgtttatttggtaattgttgagttgttttaggcacgtgcg |
14655958 |
T |
|
| Q |
232 |
gttcaggggtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggcgtcatgtct |
331 |
Q |
| |
|
||||||| |||| |||| || || ||||||||||||||| |||||||||||| |||||||||||||| | || |||||||||| ||| ||||||| || |
|
|
| T |
14655959 |
gttcaggagtggccttgcggttgagtgggggcgacaacattaaagggttgacatgggagaagtcaaaaatcggctcatcagtggtgatgtcgtcatgcct |
14656058 |
T |
|
| Q |
332 |
gcgacgtttcgtgtctttaggcacttgaaggatgcatctttggacagtaatgggg |
386 |
Q |
| |
|
||||||||| ||||||||||| |||||| || ||| | ||||| ||||| ||||| |
|
|
| T |
14656059 |
gcgacgttttgtgtctttaggaacttgatgggtgcgtgtttggtcagtagtgggg |
14656113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 498
Target Start/End: Original strand, 14656174 - 14656230
Alignment:
| Q |
442 |
ttaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatg |
498 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||| |
|
|
| T |
14656174 |
ttaagggcattgaatttgttaattttttatgtaacggttttttgtggatttatgatg |
14656230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 605
Target Start/End: Complemental strand, 20753368 - 20753303
Alignment:
| Q |
540 |
ttgcgatataaatataaacattattatgaatattaagcaaaataaatattgaaatttatgagttaa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20753368 |
ttgcgatataaatataaacattattatgaatattgagcaaaataaatattgaaatttatgagttaa |
20753303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 605
Target Start/End: Complemental strand, 20754114 - 20754049
Alignment:
| Q |
540 |
ttgcgatataaatataaacattattatgaatattaagcaaaataaatattgaaatttatgagttaa |
605 |
Q |
| |
|
||||||||| ||| ||||||||||||| | |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
20754114 |
ttgcgatatgaatgtaaacattattataattattgagcaaaataaatattagaatttatgagttaa |
20754049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 605
Target Start/End: Complemental strand, 17390667 - 17390602
Alignment:
| Q |
540 |
ttgcgatataaatataaacattattatgaatattaagcaaaataaatattgaaatttatgagttaa |
605 |
Q |
| |
|
||||||||| ||| ||||||||||||| | |||| || | ||||||||||| ||||| |||||||| |
|
|
| T |
17390667 |
ttgcgatatgaatgtaaacattattatcattattgagaagaataaatattggaatttctgagttaa |
17390602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 44 times since January 2019
Visitors: 3251