View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415_high_4 (Length: 478)
Name: NF0415_high_4
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 30 - 383
Target Start/End: Original strand, 53599702 - 53600055
Alignment:
| Q |
30 |
atgagttggcgatgcttgatatttcacctttagttatatatgtaatgatataataaaattaagatgtaaaattatgattttatgaaagggnnnnnnntca |
129 |
Q |
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| T |
53599702 |
atgagttggcgatgcttgatatttcacctttagttatatatgtaatgatataataaaattaagatgtaaaattatgattttatgaaagggaaaaaaatca |
53599801 |
T |
|
| Q |
130 |
ggcccatggctactattttgaaagaaaaccgatgtgtttaaatttttcaaaatatgaacatggactattttcaaatagacatttaatgttgcttgctagt |
229 |
Q |
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| T |
53599802 |
ggcccatggctactattttgaaagaaaaccgatgtgtttaaatttttcaaaatatgaacatggactattttcaaatagacatttaatgttgcttgctagt |
53599901 |
T |
|
| Q |
230 |
gactatgatatgatatgaatcaaatatggaatttataagatattgatgatttgatccccagactcctctcccagtgatggtttaacaaaatagaaatttc |
329 |
Q |
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| T |
53599902 |
gactatgatatgatatgaatcaaatatggaatttataagatattgatgatttgatccccagactcctctcccagtgatggtttaacaaaatagaaatttc |
53600001 |
T |
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| Q |
330 |
cactcctttgttgtggtaccaaattaccaattattgtgttgtagatttggtccc |
383 |
Q |
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| T |
53600002 |
cactcctttgttgtggtaccaaattaccaattattgtgttgtagatttggtccc |
53600055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Original strand, 53600108 - 53600137
Alignment:
| Q |
439 |
ctttgagttattaacatacgtttgtctgtg |
468 |
Q |
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| T |
53600108 |
ctttgagttattaacatacgtttgtctgtg |
53600137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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