View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0415_high_6 (Length: 431)

Name: NF0415_high_6
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0415_high_6
NF0415_high_6
[»] chr6 (39 HSPs)
chr6 (184-420)||(5398226-5398459)
chr6 (141-422)||(5439189-5439479)
chr6 (95-264)||(5351703-5351872)
chr6 (309-422)||(5156017-5156130)
chr6 (309-422)||(5372275-5372388)
chr6 (112-264)||(5135751-5135911)
chr6 (305-422)||(5177917-5178034)
chr6 (305-422)||(5279742-5279859)
chr6 (305-422)||(5688903-5689020)
chr6 (305-421)||(2939094-2939210)
chr6 (112-264)||(5100650-5100810)
chr6 (184-422)||(5180644-5180891)
chr6 (305-422)||(5351578-5351695)
chr6 (175-287)||(5352691-5352803)
chr6 (328-422)||(5334363-5334457)
chr6 (305-414)||(5242512-5242621)
chr6 (305-422)||(5346207-5346324)
chr6 (184-411)||(5255984-5256220)
chr6 (305-422)||(5098389-5098506)
chr6 (305-402)||(23127310-23127407)
chr6 (196-415)||(5448794-5449022)
chr6 (309-407)||(5100822-5100920)
chr6 (309-407)||(5135923-5136021)
chr6 (305-422)||(5065449-5065566)
chr6 (305-422)||(5126629-5126746)
chr6 (305-422)||(5352863-5352980)
chr6 (305-422)||(5427078-5427195)
chr6 (305-411)||(5283224-5283330)
chr6 (200-307)||(5155866-5155973)
chr6 (194-295)||(5242360-5242459)
chr6 (315-402)||(5072692-5072779)
chr6 (306-415)||(5253718-5253827)
chr6 (309-364)||(2657155-2657210)
chr6 (305-415)||(5124443-5124553)
chr6 (45-109)||(5352615-5352677)
chr6 (95-134)||(5255890-5255930)
chr6 (95-126)||(5334562-5334593)
chr6 (199-244)||(5334453-5334498)
chr6 (184-228)||(5283109-5283153)
[»] chr3 (12 HSPs)
chr3 (305-423)||(47985393-47985511)
chr3 (305-423)||(48003967-48004085)
chr3 (305-423)||(47994680-47994798)
chr3 (305-423)||(48013252-48013370)
chr3 (184-252)||(47985230-47985298)
chr3 (184-252)||(47994517-47994585)
chr3 (184-252)||(48003804-48003872)
chr3 (184-252)||(48013089-48013157)
chr3 (95-134)||(47985137-47985177)
chr3 (95-134)||(47994424-47994464)
chr3 (95-134)||(48003711-48003751)
chr3 (95-134)||(48012996-48013036)
[»] chr7 (1 HSPs)
chr7 (326-422)||(36212942-36213038)
[»] chr4 (4 HSPs)
chr4 (350-403)||(25569037-25569090)
chr4 (305-420)||(4132618-4132730)
chr4 (305-400)||(4122644-4122739)
chr4 (305-411)||(7884155-7884261)
[»] scaffold1476 (2 HSPs)
scaffold1476 (336-399)||(43-106)
scaffold1476 (150-189)||(189-228)
[»] chr2 (1 HSPs)
chr2 (336-399)||(22583333-22583396)
[»] scaffold0294 (1 HSPs)
scaffold0294 (306-402)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 184 - 420
Target Start/End: Complemental strand, 5398459 - 5398226
Alignment:
Q  184 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatc 283  Q
    ||||||||| |||  ||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||     
T  5398459 ttcattcaactcggcttttcttctttcttttctgattgaagtcatcagtgggctcatcttcagtagagaatctcttgacagggcgttcattttcatcat- 5398361  T
Q  284 actacaagtaattgtattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttacca 383  Q
      |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||| ||||||||||||    
T  5398360 --tacaagcaattgcattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttacca 5398263  T
Q  384 ggttctatacttgatactaccctctgcccctcttcat 420  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5398262 ggttctatacttgatactaccctttgcccctcttcat 5398226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 141 - 422
Target Start/End: Complemental strand, 5439479 - 5439189
Alignment:
Q  141 caccataagaattgatttttgctcggccattgttttacaatctttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcct 240  Q
    |||||||||||||||| ||| |   ||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  5439479 caccataagaattgatgtttaccaagccattgttttaccatttttcattccattcgatttttcttctttctgttccgattgaagtcatcagtgggctcct 5439380  T
Q  241 cttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaattgtattcaa---------atcatatacaagataaactgttgtctt 331  Q
    || ||||||||||||||||  |||||||||| |||||||||   |||| || ||  | ||||||         ||||||||| |||||| ||| ||||||    
T  5439379 ctccagtagagaatctcttagcagggcgttcattttcatcacatctactagcaacggcattcaaattttgtgcatcatatacgagataagctgctgtctt 5439280  T
Q  332 cttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctcttcatct 422  Q
     ||  |||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||  || |||||||||||| ||||||    
T  5439279 tttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaacctctgcccctcctcatct 5439189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 95 - 264
Target Start/End: Complemental strand, 5351872 - 5351703
Alignment:
Q  95 taaaatctagaaacttcagccaaaaatggaaa-caattgttagcggtcaccataagaattgatttttgctcggccattgttttacaatctttcattcaat 193  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||||| ||||| |||||||| || |     
T  5351872 taaaatcaagaaactacagccaaaaatggaaaacaattgttagccgtcaccataa-aattgatttttgctccgccattgctttactatctttcaatccac 5351774  T
Q  194 tcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacag 264  Q
    ||  ||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||    
T  5351773 tcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacag 5351703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 309 - 422
Target Start/End: Original strand, 5156017 - 5156130
Alignment:
Q  309 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct 408  Q
    ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  5156017 tatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 5156116  T
Q  409 gcccctcttcatct 422  Q
    ||||||||||||||    
T  5156117 gcccctcttcatct 5156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 309 - 422
Target Start/End: Complemental strand, 5372388 - 5372275
Alignment:
Q  309 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct 408  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  5372388 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccctct 5372289  T
Q  409 gcccctcttcatct 422  Q
    ||||||||||||||    
T  5372288 gcccctcttcatct 5372275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 112 - 264
Target Start/End: Original strand, 5135751 - 5135911
Alignment:
Q  112 agccaaaaatggaaa-caattgttagcggtcaccataagaattgatttttgctcggccattgttttacaatctt--------tcattcaattcgattttt 202  Q
    ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| |||||        |||||| | ||| |||||    
T  5135751 agccaaaaatggaaaacaattgttagcagtcatcataa-aattgatttttgctcggccattgctttactatcttccattgattcattccactcggttttt 5135849  T
Q  203 cttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacag 264  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5135850 cttctttctgttctgattgaagtcatcattgggctcctcttcagtagagaatctcttgacag 5135911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 5178034 - 5177917
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||     
T  5178034 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5177935  T
Q  405 ctctgcccctcttcatct 422  Q
    ||||| ||||||||||||    
T  5177934 ctctgaccctcttcatct 5177917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 5279859 - 5279742
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||     
T  5279859 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5279760  T
Q  405 ctctgcccctcttcatct 422  Q
    ||||| ||||||||||||    
T  5279759 ctctgaccctcttcatct 5279742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 5688903 - 5689020
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||| |||||||||||||| ||||||||||||||| | |||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||     
T  5688903 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 5689002  T
Q  405 ctctgcccctcttcatct 422  Q
    ||||| ||||||||||||    
T  5689003 ctctgtccctcttcatct 5689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 305 - 421
Target Start/End: Complemental strand, 2939210 - 2939094
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||| ||||||| ||||| ||||||||||||| |||||||||| | ||||||||| |||||||||||||||||||||| || |||||||||||||    
T  2939210 atcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactacc 2939111  T
Q  405 ctctgcccctcttcatc 421  Q
    |||||||| ||||||||    
T  2939110 ctctgcccttcttcatc 2939094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 112 - 264
Target Start/End: Original strand, 5100650 - 5100810
Alignment:
Q  112 agccaaaaatggaaa-caattgttagcggtcaccataagaattgatttttgctcggccattgttttacaatctttcattcaat--------tcgattttt 202  Q
    ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||  |||| |||||||||| | |        ||| |||||    
T  5100650 agccaaaaatggaaaacaattgttagcagtcatcataa-aattgatttttgctcggccattgcattactatctttcattgattcattccactcggttttt 5100748  T
Q  203 cttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacag 264  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5100749 cttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacag 5100810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 184 - 422
Target Start/End: Original strand, 5180644 - 5180891
Alignment:
Q  184 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatc 283  Q
    ||||||| | ||| ||||||||||||||||||||||||||||| ||   |   || ||||||| |||||||||||| |||| || |||  |||||||| |    
T  5180644 ttcattccactcggtttttcttctttctgttctgattgaagtcgtcggcgtgttcgtcttcagcagagaatctcttcacagagcattcagtttcatcacc 5180743  T
Q  284 actacaagtaattgtattcaaatc---------atatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccact 374  Q
     ||||||| |||   |||||||||         |||||| ||||||| || |||||||||||||||||||   |||||||||||||||   |||||||||    
T  5180744 tctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccact 5180843  T
Q  375 ttgttaccaggttctatacttgatactaccctctgcccctcttcatct 422  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  5180844 ttgttaccgggttctatgcttgatactaccctctgaccctcttcatct 5180891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 5351695 - 5351578
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||| |||||||||  |||||| ||||||||| |||||||||| |||||||||   ||||||||||||||||  ||||||||||||||||||| |    
T  5351695 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatactaac 5351596  T
Q  405 ctctgcccctcttcatct 422  Q
    ||||||||||| ||||||    
T  5351595 ctctgcccctcctcatct 5351578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 5352691 - 5352803
Alignment:
Q  175 ttacaatctttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttcttt 274  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||  || ||| ||  |||||||||| |||||||||||||||||||| | || ||    
T  5352691 ttaccatctttcattccattcgatttttcttctttctgttctgattgacatcttcagtgtgctcctcttcaatagagaatctcttgacagggtgctcatt 5352790  T
Q  275 ttcatcatcacta 287  Q
    |||||||||||||    
T  5352791 ttcatcatcacta 5352803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 422
Target Start/End: Complemental strand, 5334457 - 5334363
Alignment:
Q  328 tcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctcttcatct 422  Q
    ||||||||| ||||||||||||||| |||||||||   ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  5334457 tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatct 5334363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 414
Target Start/End: Original strand, 5242512 - 5242621
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||| |||||||||  |||||||||||||||||||   |||||||||||||||   |||||||||||||||||||||||||||||| |||||||     
T  5242512 atcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactact 5242611  T
Q  405 ctctgcccct 414  Q
    ||| ||||||    
T  5242612 ctcagcccct 5242621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 5346324 - 5346207
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||  ||||||| || ||||||||||||||||||| ||||||||| |||||    |||||||||||||||||||||||||||||||||||| ||     
T  5346324 atcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaact 5346225  T
Q  405 ctctgcccctcttcatct 422  Q
    ||||| ||||| ||||||    
T  5346224 ctctggccctcctcatct 5346207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 184 - 411
Target Start/End: Original strand, 5255984 - 5256220
Alignment:
Q  184 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatc 283  Q
    ||||||| | ||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||| || ||||   |||  | |||  ||||||||      
T  5255984 ttcattccactcggtttttcttctttctgttctgattgaaatcatcagtgggctcctcttcagtagaaaaactctcttcagaccattcactttcatcacg 5256083  T
Q  284 actacaagtaattgtattcaaat---------catatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccact 374  Q
     ||||||| |||   ||||||||         ||||||| | ||||| || ||||||||||||||||||||||||||  ||||||||    |||||||||    
T  5256084 gctacaagcaatgtgattcaaattttgtgcatcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccact 5256183  T
Q  375 ttgttaccaggttctatacttgatactaccctctgcc 411  Q
    |||||||| ||||| |||||||||| |||||||||||    
T  5256184 ttgttacctggttcaatacttgatattaccctctgcc 5256220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 5098506 - 5098389
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaa-aatgaacctccactttgttaccaggttctatacttgatactac 403  Q
    ||||||||| |||||||||| |||||| ||||||||||||   ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  5098506 atcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatga-cctccactttgttaccaggttctatacttgatattac 5098408  T
Q  404 cctctgcccctcttcatct 422  Q
    |||||| | ||| ||||||    
T  5098407 cctctggctctcctcatct 5098389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 402
Target Start/End: Original strand, 23127310 - 23127407
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 402  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||||| | |  |||||||| ||||||||||||||||  |||||||||||    
T  23127310 atcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatacta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 415
Target Start/End: Complemental strand, 5449022 - 5448794
Alignment:
Q  196 gatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaat 295  Q
    ||||||||||||||||||||||||||||||||||   ||  || ||||||||||||||  |||| | || || ||| ||||||||| | ||||||| |||    
T  5449022 gatttttcttctttctgttctgattgaagtcatctgcgggatcgtcttcagtagagaagttctttagagagcattcattttcatcacctctacaagcaat 5448923  T
Q  296 tgtattcaaatc---------atatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggt 386  Q
        || |||||         |||||| ||||| |||  |||||||| |||| ||||||||||||| |||||||||   | |||||||||||| || |||    
T  5448922 gacgttaaaatcttgtgcatcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggt 5448823  T
Q  387 tctatacttgatactaccctctgcccctc 415  Q
    |||||||||||||||| ||||||||||||    
T  5448822 tctatacttgatactaacctctgcccctc 5448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 5100822 - 5100920
Alignment:
Q  309 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctc 407  Q
    ||||| |||||||||| |||||| ||||||||||||   ||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||||    
T  5100822 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctc 5100920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 5135923 - 5136021
Alignment:
Q  309 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctc 407  Q
    ||||| |||||||||| |||||| ||||||||||||   ||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||||    
T  5135923 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctc 5136021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 5065449 - 5065566
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||  ||||||||||||||| ||||||||| |||| | ||||||||||||| |  ||  |||||||| || |||||||| ||||||||||||||     
T  5065449 atcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactact 5065548  T
Q  405 ctctgcccctcttcatct 422  Q
    ||||||||||| ||||||    
T  5065549 ctctgcccctcctcatct 5065566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 5126629 - 5126746
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||  |||||||| | ||||||||||||||||||| | |||| |||||||| |  || ||| ||||||||||||| ||||||||||||||||||     
T  5126629 atcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactact 5126728  T
Q  405 ctctgcccctcttcatct 422  Q
    |||| |||||| ||||||    
T  5126729 ctctccccctcctcatct 5126746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 5352863 - 5352980
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||| ||||||| ||||||||||||||| ||||||  |||||| ||||||| |   ||||| ||||||| |||||| || ||||||||||||||     
T  5352863 atcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactact 5352962  T
Q  405 ctctgcccctcttcatct 422  Q
    ||||||||||| ||||||    
T  5352963 ctctgcccctcctcatct 5352980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 5427195 - 5427078
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||| |||||||||  ||||||| |||||| ||||   |||||||||||||||   ||||||| ||||||||||||||||||||||||||||||     
T  5427195 atcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactact 5427096  T
Q  405 ctctgcccctcttcatct 422  Q
    || | |||||| ||||||    
T  5427095 ctttccccctcctcatct 5427078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 411
Target Start/End: Original strand, 5283224 - 5283330
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaa-atgaacctccactttgttaccaggttctatacttgatactac 403  Q
    ||||||||| ||||||| || |||||||||||||||||||   || ||||||||||| |||| |||||||||||||||| ||||| |||||||||| |||    
T  5283224 atcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatga-cctccactttgttacctggttcgatacttgatattac 5283322  T
Q  404 cctctgcc 411  Q
    ||||||||    
T  5283323 cctctgcc 5283330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 5155866 - 5155973
Alignment:
Q  200 tttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaattgta 299  Q
    ||||||||||||||| |||||| |||||||| |||  ||| |||||| ||  ||||||||||||| | |||| |||||||||| |||||||| ||||| |    
T  5155866 tttcttctttctgttttgattgcagtcatcaatgggatccccttcagaagctaatctcttgacagagagttcattttcatcattactacaagaaattgca 5155965  T
Q  300 ttcaaatc 307  Q
    ||||||||    
T  5155966 ttcaaatc 5155973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 5242360 - 5242459
Alignment:
Q  194 tcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagta 293  Q
    ||||||||||||  ||| |||||||||||||||||||   | ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||    
T  5242360 tcgatttttctt--ttccgttctgattgaagtcatcagcaggctcctcttcagtagagaatctcttgacagagcgttcatcttcatcacctctataagta 5242457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 315 - 402
Target Start/End: Original strand, 5072692 - 5072779
Alignment:
Q  315 agataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 402  Q
    ||||||| | ||||||| |||||||||||||| ||||||| |||||    ||||||||||| ||||||||| ||||||||||||||||    
T  5072692 agataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatacta 5072779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 415
Target Start/End: Complemental strand, 5253827 - 5253718
Alignment:
Q  306 tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc 405  Q
    |||||||  ||||||||||| ||| ||||||||||||||   ||||||||||||| |  || ||||||||| || |||||||| |||||| ||| ||| |    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc 5253728  T
Q  406 tctgcccctc 415  Q
    | ||||||||    
T  5253727 tttgcccctc 5253718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 2657155 - 2657210
Alignment:
Q  309 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatg 364  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||| || ||||||||    
T  2657155 tatacgagataaattgttgccttcttcacaatgaaatcattctcgaatacaaaatg 2657210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 415
Target Start/End: Original strand, 5124443 - 5124553
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    |||||||| || ||| | |||||||| ||||||||||||    |||| ||||||||||  ||  |||||||| ||||||||||||||||| |||||||      
T  5124443 atcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatactaat 5124542  T
Q  405 ctctgcccctc 415  Q
    || ||||||||    
T  5124543 ctatgcccctc 5124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 5352615 - 5352677
Alignment:
Q  45 aaaaactgtaatctcgcttctcattaggattgaaataaaatcaccacagttaaaatctagaaact 109  Q
    ||||| |||||||||||||||| | |||||||||  |||| |||||||| |||||||||||||||    
T  5352615 aaaaattgtaatctcgcttctcttaaggattgaa--aaaaccaccacagataaaatctagaaact 5352677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 5255890 - 5255930
Alignment:
Q  95 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 134  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  5255890 taaaatctagaaacttcagccaaaaatggaaaacaattgtt 5255930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 5334593 - 5334562
Alignment:
Q  95 taaaatctagaaacttcagccaaaaatggaaa 126  Q
    ||||||||||||||||||||||||||||||||    
T  5334593 taaaatctagaaacttcagccaaaaatggaaa 5334562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 5334498 - 5334453
Alignment:
Q  199 ttttcttctttctgttctgattgaagtcatcactggactcctcttc 244  Q
    |||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  5334498 ttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 5334453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 5283109 - 5283153
Alignment:
Q  184 ttcattcaattcgatttttcttctttctgttctgattgaagtcat 228  Q
    ||||||| | ||| ||||||||||||||||||||| |||||||||    
T  5283109 ttcattccactcggtttttcttctttctgttctgagtgaagtcat 5283153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 305 - 423
Target Start/End: Original strand, 47985393 - 47985511
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||     
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  405 ctctgcccctcttcatctc 423  Q
    |||| |||||| |||||||    
T  47985493 ctctccccctcctcatctc 47985511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 305 - 423
Target Start/End: Original strand, 48003967 - 48004085
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||     
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  405 ctctgcccctcttcatctc 423  Q
    |||| |||||| |||||||    
T  48004067 ctctccccctcctcatctc 48004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 305 - 423
Target Start/End: Original strand, 47994680 - 47994798
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| | ||||||||||||||||||     
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  405 ctctgcccctcttcatctc 423  Q
    |||| |||||| |||||||    
T  47994780 ctctccccctcctcatctc 47994798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 305 - 423
Target Start/End: Original strand, 48013252 - 48013370
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| | ||||||||||||||||||     
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  405 ctctgcccctcttcatctc 423  Q
    |||| |||||| |||||||    
T  48013352 ctctccccctcctcatctc 48013370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 47985230 - 47985298
Alignment:
Q  184 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 252  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  47985230 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47985298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 47994517 - 47994585
Alignment:
Q  184 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 252  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  47994517 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47994585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 48003804 - 48003872
Alignment:
Q  184 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 252  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  48003804 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48003872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 48013089 - 48013157
Alignment:
Q  184 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 252  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  48013089 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48013157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 47985137 - 47985177
Alignment:
Q  95 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 134  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  47985137 taaaatctagaaacttcagccaaaattggaaaacaattgtt 47985177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 47994424 - 47994464
Alignment:
Q  95 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 134  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  47994424 taaaatctagaaacttcagccaaaattggaaaacaattgtt 47994464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 48003711 - 48003751
Alignment:
Q  95 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 134  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  48003711 taaaatctagaaacttcagccaaaattggaaaacaattgtt 48003751  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 48012996 - 48013036
Alignment:
Q  95 taaaatctagaaacttcagccaaaaatgg-aaacaattgtt 134  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  48012996 taaaatctagaaacttcagccaaaattggaaaacaattgtt 48013036  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 422
Target Start/End: Original strand, 36212942 - 36213038
Alignment:
Q  326 tgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctcttcatct 422  Q
    ||||||||||||||||||||  ||||||||||||| |  |||||||| ||| | |||||||||||||||||||||||  ||||||||||| ||||||    
T  36212942 tgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatctctgcccctcctcatct 36213038  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 25569090 - 25569037
Alignment:
Q  350 ctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 403  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactac 25569037  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 420
Target Start/End: Original strand, 4132618 - 4132730
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    ||||||||  |||||||||| ||||||| |||||||||||   ||| |||||||||    || ||| ||||||| ||||||||| ||| ||||||||||     
T  4132618 atcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaa---caatctcgactttgtcaccaggttccatatttgatactact 4132714  T
Q  405 ctctgcccctcttcat 420  Q
    ||||||| ||| ||||    
T  4132715 ctctgccactcctcat 4132730  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 4122644 - 4122739
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatac 400  Q
    ||||||||  |||||||||| ||||||| |||||||||||   ||  ||||||||| |  || ||||||||||| ||||||||| ||| |||||||    
T  4122644 atcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccatatttgatac 4122739  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 411
Target Start/End: Original strand, 7884155 - 7884261
Alignment:
Q  305 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 404  Q
    |||||| |||||||||| |||||| |||||||||||||| |||||   |||||||| |   ||||  | || ||| |||||||||||| |||||| |||     
T  7884155 atcatagacaagataaattgttgttttcttcacaatgaattcatttgtaaaaacaacaaccaccttaatttcgtttccaggttctatatttgatattact 7884254  T
Q  405 ctctgcc 411  Q
    |||||||    
T  7884255 ctctgcc 7884261  T

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Target: scaffold1476 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 106 - 43
Alignment:
Q  336 acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata 399  Q
    ||||||||||  |||||| |||||| |  |||||||||||| ||||||||||||||||||||||    
T  106 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata 43  T

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Target: scaffold1476; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 228 - 189
Alignment:
Q  150 aattgatttttgctcggccattgttttacaatctttcatt 189  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  228 aattgatttttgctccgccattgttttaccatctttcatt 189  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 22583333 - 22583396
Alignment:
Q  336 acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata 399  Q
    ||||||||||  |||||| |||||| |  |||||||||||| ||||||||||||||||||||||    
T  22583333 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata 22583396  T

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Target: scaffold0294 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 7878 - 7974
Alignment:
Q  306 tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 402  Q
    ||||||| |||||||| |||||| |  ||| |||||||| | | | ||||||||| |  ||||||||||||||| || ||||||| |||||||||||    
T  7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatacta 7974  T

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