View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0415_low_1 (Length: 617)
Name: NF0415_low_1
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Original strand, 23134642 - 23135127
Alignment:
| Q |
16 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttgctcatttggaatggagggggtggcgagcatgaa |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
23134642 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgg---gggtggcgagcatgaa |
23134738 |
T |
|
| Q |
116 |
acttgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcattagtgatagtttgtttatttggtaattgttgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||| |
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|
| T |
23134739 |
acttgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgg |
23134838 |
T |
|
| Q |
216 |
gttgtttttggcacgtgcggttcaggggtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcag |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134839 |
gttgtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcag |
23134938 |
T |
|
| Q |
316 |
tggccatggcgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcggcgtgtttggacagtagtggtgcgtgactggttatttggaagggg |
415 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||| |
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| T |
23134939 |
tggccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatc---ttcggacagtaatggggcgtgactggttatttggaagggg |
23135035 |
T |
|
| Q |
416 |
tatgccagttttgtttcttgttgatagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
507 |
Q |
| |
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|| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23135036 |
taggccagttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
23135127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Complemental strand, 11895238 - 11894753
Alignment:
| Q |
16 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttgctcatttggaatggagggggtggcgagcatgaa |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| |
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| T |
11895238 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttagaatgg---gggtggcgagcatgaa |
11895142 |
T |
|
| Q |
116 |
acttgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcattagtgatagtttgtttatttggtaattgttgg |
215 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||| |
|
|
| T |
11895141 |
acttgaattcgggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgg |
11895042 |
T |
|
| Q |
216 |
gttgtttttggcacgtgcggttcaggggtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcag |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11895041 |
gttgtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcag |
11894942 |
T |
|
| Q |
316 |
tggccatggcgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcggcgtgtttggacagtagtggtgcgtgactggttatttggaagggg |
415 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||| |
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|
| T |
11894941 |
tggccatggtgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcatc---ttcggacagtaatggggcgtgactggttatttggaagggg |
11894845 |
T |
|
| Q |
416 |
tatgccagttttgtttcttgttgatagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
507 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11894844 |
taggccagttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
11894753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Complemental strand, 20282939 - 20282454
Alignment:
| Q |
16 |
gatggacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttgctcatttggaatggagggggtggcgagcatgaa |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
20282939 |
gatgaacatcatccttatgatagctagtttcaccaatttggtcttttgtggggtggttagcttcttggtcatttggaatgg---gggtggcgagcatgaa |
20282843 |
T |
|
| Q |
116 |
acttgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcattagtgatagtttgtttatttggtaattgttgg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||| |
|
|
| T |
20282842 |
acttgaattagggtcgggttcaggtgttggattattgactaaggtgggatcattttcttgaacttcatttgtggtagtttgtttagttggtaactgttgg |
20282743 |
T |
|
| Q |
216 |
gttgtttttggcacgtgcggttcaggggtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcag |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20282742 |
gttgtttttggcacgtgcggttcaggtgtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcag |
20282643 |
T |
|
| Q |
316 |
tggccatggcgtcatgtctgcgacgtttcgtgtctttgggcacttgaaggatgcggcgtgtttggacagtagtggtgcgtgactggttatttggaagggg |
415 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||||||||||||||||||||||| || | | |||||| || ||| |||||||||||||||||||||||| |
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|
| T |
20282642 |
tggccatggtgtcatgtctacgatgtttcgtgtctttgggcacttgaaggat---gcatctctggacaataatggggcgtgactggttatttggaagggg |
20282546 |
T |
|
| Q |
416 |
tatgccagttttgtttcttgttgatagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
507 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282545 |
taggccagttttgtttctagttgttagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
20282454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 135 - 503
Target Start/End: Original strand, 14655859 - 14656230
Alignment:
| Q |
135 |
tcaggtgttggattattgactaaggtgggatcattttcttgaacttcattagtgatagtttgtttatttggtaattgttgggttgtttttggcacgtgcg |
234 |
Q |
| |
|
||||||||| ||||||||| | ||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
14655859 |
tcaggtgtttgattattgataacaatgggaacatttttttgagcttcattagtggtagtttgtttatttggtaattgttgagttgttttaggcacgtgcg |
14655958 |
T |
|
| Q |
235 |
gttcaggggtggtcttgtggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggcgtcatgtct |
334 |
Q |
| |
|
||||||| |||| |||| || || ||||||||||||||| |||||||||||| |||||||||||||| | || |||||||||| ||| ||||||| || |
|
|
| T |
14655959 |
gttcaggagtggccttgcggttgagtgggggcgacaacattaaagggttgacatgggagaagtcaaaaatcggctcatcagtggtgatgtcgtcatgcct |
14656058 |
T |
|
| Q |
335 |
gcgacgtttcgtgtctttgggcacttgaaggatgcggcgtgtttggacagtagtg------gtgcgtgactggttatttggaaggggtatgccagttttg |
428 |
Q |
| |
|
||||||||| |||||||| || |||||| || | |||||||||| |||||||| | ||||| |||||| || ||| | || ||||| |||| |
|
|
| T |
14656059 |
gcgacgttttgtgtctttaggaacttgatgggt---gcgtgtttggtcagtagtggggtaagggcgtggctggttgttaggattgagtgggccagctttg |
14656155 |
T |
|
| Q |
429 |
tttcttgttgatagatgattaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatg |
503 |
Q |
| |
|
||||| | | |||| |||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||| |
|
|
| T |
14656156 |
tttctaatagttagactgttaagggcattgaatttgttaattttttatgtaacggttttttgtggatttatgatg |
14656230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 545 - 610
Target Start/End: Complemental strand, 20753368 - 20753303
Alignment:
| Q |
545 |
ttgcgatataaatataaacattattatgaatattaagcaaaataaatattgaaatttatgagttaa |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20753368 |
ttgcgatataaatataaacattattatgaatattgagcaaaataaatattgaaatttatgagttaa |
20753303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 610
Target Start/End: Complemental strand, 20754114 - 20754049
Alignment:
| Q |
545 |
ttgcgatataaatataaacattattatgaatattaagcaaaataaatattgaaatttatgagttaa |
610 |
Q |
| |
|
||||||||| ||| ||||||||||||| | |||| ||||||||||||||| |||||||||||||| |
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|
| T |
20754114 |
ttgcgatatgaatgtaaacattattataattattgagcaaaataaatattagaatttatgagttaa |
20754049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 610
Target Start/End: Complemental strand, 17390667 - 17390602
Alignment:
| Q |
545 |
ttgcgatataaatataaacattattatgaatattaagcaaaataaatattgaaatttatgagttaa |
610 |
Q |
| |
|
||||||||| ||| ||||||||||||| | |||| || | ||||||||||| ||||| |||||||| |
|
|
| T |
17390667 |
ttgcgatatgaatgtaaacattattatcattattgagaagaataaatattggaatttctgagttaa |
17390602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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