View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415_low_10 (Length: 309)
Name: NF0415_low_10
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 38160802 - 38160947
Alignment:
| Q |
95 |
ctttgaactttgaaatatgcaggattcacaaggagcaggtcgaaaagtggcaggaagaaatcaaagaattgcgtgcacttgatgcctaaaatgaggaagc |
194 |
Q |
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| T |
38160802 |
cttttaactttccaatatgcaggattcacaaggagcaggtcgaaaaatggcaggaagaaatcaaagaactgcgtgcacttgatgcctcaaatgaggaagc |
38160901 |
T |
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| Q |
195 |
caaagctcttctgcaaaatgctcgatacgtacttcatctcactcga |
240 |
Q |
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| T |
38160902 |
caatgctcttctgcaaaatgctcgatatgtacttcagctcactcga |
38160947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 38116976 - 38117120
Alignment:
| Q |
95 |
ctttgaactttgaaatatgcaggattcacaaggagcaggtcgaaaagtggcaggaagaaatcaaagaattgcgtgcacttgatgcctaaaatgaggaagc |
194 |
Q |
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|||| |||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||||||| |||||||||||| |
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| T |
38116976 |
cttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgtgcactcgatgcctcaaatgaggaagc |
38117075 |
T |
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| Q |
195 |
caaagctcttctgcaaaatgctcgatacgtacttcatctcactcg |
239 |
Q |
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| T |
38117076 |
caatgctcttctgcaaaatgctcgatatgtacttcagctcactcg |
38117120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 49004779 - 49004923
Alignment:
| Q |
95 |
ctttgaactttgaaatatgcaggattcacaaggagcaggtcgaaaagtggcaggaagaaatcaaagaattgcgtgcacttgatgcctaaaatgaggaagc |
194 |
Q |
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|||| |||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| | || ||||| ||||||| |||||||||||| |
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| T |
49004779 |
cttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaagaactccgagcactcgatgcctcaaatgaggaagc |
49004878 |
T |
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| Q |
195 |
caaagctcttctgcaaaatgctcgatacgtacttcatctcactcg |
239 |
Q |
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||| ||||||||||||||||||||||| |||||||| |||||||| |
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| T |
49004879 |
caatgctcttctgcaaaatgctcgatatgtacttcagctcactcg |
49004923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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