View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0415_low_13 (Length: 291)

Name: NF0415_low_13
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0415_low_13
NF0415_low_13
[»] chr8 (1 HSPs)
chr8 (30-291)||(37941386-37941647)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 37941386 - 37941647
Alignment:
Q  30 atgagttcttcgggcccattcttttgaaccattgttactactcatcaagttaacacgatcatcatgcctcaatattcctaattcctccaagacattaccc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37941386 atgagttcttcgggcccattcttttgaaccattgttactactcatcaagttaacacgatcatcatgcctcaatattcctaattcctccaagacattaccc 37941485  T
Q  130 attttgggatgagaatcagtacttggcggaatttccaaagatggtacttgtgtttttgagacaagagcagaagaataaccaagagggtacttttgcagtg 229  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37941486 attttgagatgagaatcagtacttggcggaatttccaaagatggtacttgtgtttttgagacaagagctgaagaataaccaagagggtacttttgcagtg 37941585  T
Q  230 gcttttgtggtgtttgatcatgaattgttcgaaaggtgaaagcttggttttggctgtgcatg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37941586 gcttttgtggtgtttgatcatgaattgttcgaaaggtgaaagcttggttttggctgtgcatg 37941647  T

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