View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0415_low_16 (Length: 250)
Name: NF0415_low_16
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 37207005 - 37206813
Alignment:
| Q |
49 |
tctcatactatacaagctgttgattttcaaagctatagaaacctccttgtagataagcacatagatctgtataatcatttaatggcatatgctgataagt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37207005 |
tctcatactatacaagctgttgattttcaaagctatagaaacctccttgtagataagcacatagatctgtataatcatttaatggcatatgctgataagt |
37206906 |
T |
|
| Q |
149 |
aagattctcttttatgtacttcattcttataaagcatataagcagctgaataggaaaataacaaacagaactgactctatcaatgagaataat |
241 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37206905 |
aagattctcttttatgcacttcattcttataaagcatataagcagctgaatagaaaaataacaaacagaactgactctatcaatgagaataat |
37206813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37207624 - 37207581
Alignment:
| Q |
1 |
ttcctattcctatggatttcattcactcataagcaatgatgatg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37207624 |
ttcctattcctatggatttcattcactcataagcaacgatgatg |
37207581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 37207572 - 37207543
Alignment:
| Q |
1 |
ttcctattcctatggatttcattcactcat |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37207572 |
ttcctattcctatggatttcattcactcat |
37207543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 22 times since January 2019
Visitors: 3251