View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415_low_20 (Length: 207)
Name: NF0415_low_20
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 37207681 - 37207559
Alignment:
| Q |
1 |
agtctccaaaaacatgaaggaaaaaaggtgcaccaagccaccaatctatggatttcattcctattcctatggatttcattcactcataagcaacgatgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37207681 |
agtctccaaaaacatgaaggaaaaaaggtgcaccaagccaccatcctatggatttcattcctattcctatggatttcattcactcataagcaacgatgat |
37207582 |
T |
|
| Q |
101 |
gacttttcattcctattcctatg |
123 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37207581 |
gacttttcattcctattcctatg |
37207559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 37207577 - 37207543
Alignment:
| Q |
53 |
tttcattcctattcctatggatttcattcactcat |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
37207577 |
tttcattcctattcctatggatttcattcactcat |
37207543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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