View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415_low_3 (Length: 485)
Name: NF0415_low_3
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 23 - 474
Target Start/End: Original strand, 33063339 - 33063786
Alignment:
| Q |
23 |
atcatcaccttacaaactggtgttatggtgttttgttaagagaatgtgtattgtattaaattttgttaaagagtttttagggaatacttgattgatggat |
122 |
Q |
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| T |
33063339 |
atcatcaccttacaaactggtgttatggggttttgttaagagaatgtgtattgtattaaattttgttaaagagtttttagtgaatacttgattgatggat |
33063438 |
T |
|
| Q |
123 |
tgttttaatctattcattatcatctaaattcaaatttaataaatccagctattttgtcacctcctagtccgtctctaatctaggatatgtatgattggag |
222 |
Q |
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| T |
33063439 |
tgttttaatctattcattatcatctaaattcaaatttaataaatccagctattttgtcacctcttagtccgtctctaatctaggatatgtatgattggag |
33063538 |
T |
|
| Q |
223 |
attcatcaactctctatatgatcacttaaggaatgaggatctttctcatcctcatttagaggagaaatgactttcaatcatgtatatcacaaattttgcg |
322 |
Q |
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| T |
33063539 |
attcatcaa--ctctatatgatcacttaaggaatgaggatctttctcatcctcatttagaggagaaatgactttcaatcatgtatatcacaaattttgcg |
33063636 |
T |
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| Q |
323 |
actttccaagtctcaagatgcattcatcctcataaaatgtatttcttaaagttttatcatttacatagaaattattatttatttaccaactaagttgaaa |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33063637 |
actttccaagtctcaagatgcattcatcctcataaaatgtatttct--aagttttatcatttacatagaaattatcatttatttaccaactaagttgaaa |
33063734 |
T |
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| Q |
423 |
tcaactgttgtatcttcacatattcattttaacttcaacttgtatggttcat |
474 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33063735 |
tcaattgttgtatcttcacatattcattttaacttcaacttgtctggttcat |
33063786 |
T |
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