View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415_low_6 (Length: 439)
Name: NF0415_low_6
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 48 - 430
Target Start/End: Original strand, 1239157 - 1239542
Alignment:
| Q |
48 |
tatatatttacgttgaaatttcacttaattaagagagtgaatattaagtgacacatgcatgagatgaaatgaaacaaagaagggtgtgtctgtatttata |
147 |
Q |
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| T |
1239157 |
tatatatttacgttgaaatttcacttaattaagagagtgaatattaagtgacacatgcatgagatgaaatgaaacaaagaagggtgtgtctgtatttata |
1239256 |
T |
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| Q |
148 |
gtgaatgaag---attccaaaggtgaattaaagcggcagtgttcgtttgtttggttacttacacgtcatcatctacgttgttactatagaaaaacttaca |
244 |
Q |
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| T |
1239257 |
gtgaatgaagaagattccaaaggtgaattaaagcggcagtgtttgtttgtttggttacttacacgtcatcatctacgttgttactatagaaaaacttaca |
1239356 |
T |
|
| Q |
245 |
cgttttagcttcttatttgacacgtgcgaaattggtcttcgtgggcctcaataataagggtttgcctctactgcatgctgctatgcatgaaactcagtga |
344 |
Q |
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| T |
1239357 |
cgttttagcttcttatttgacacgtgcgaaattggtcttcgtgggcctcaataataagggtttgcctctactgcatgctgctatgcatgaaactcagtga |
1239456 |
T |
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| Q |
345 |
gatattaacttaattactctatttgtaacttctccatttccacctcttcaataactccaccatatatattaattcatgctctctgc |
430 |
Q |
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| T |
1239457 |
gatattaacttgattactctatttgtaacttctccatttccacctcttcaataactccaccatatatattaattcatgctctctgc |
1239542 |
T |
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