View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415_low_9 (Length: 334)
Name: NF0415_low_9
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 46 - 307
Target Start/End: Original strand, 28812655 - 28812916
Alignment:
| Q |
46 |
tcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttgacacttctgtaaatcattaaggtctgcaagattatgagac |
145 |
Q |
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| T |
28812655 |
tcaagaactaacttgatgagcataagaaggttggtcatatatagaaatgtagcttccttgacacttctgtaaatcattaaggtctgcaagattatgagac |
28812754 |
T |
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| Q |
146 |
aagactcccacaacagcaccaattccctgcaaagaaactactacatgatgatactgtttcaaacatacaaagatcacataaaaggattctaatacaaaaa |
245 |
Q |
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| T |
28812755 |
aagactcccacaacagcaccaattccctgcaaagaaactactacatgatgatactgtttcgaacatacaaagatcgcataaaaggattctaatacaaaaa |
28812854 |
T |
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| Q |
246 |
tactaccttatattttgtaacattaagcatgatatagtcagggttagaaacattaccacgtg |
307 |
Q |
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| T |
28812855 |
tactaccttatattttgtaacattaagcatgatatagtcagggttagaaacattaccacgtg |
28812916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33491178 - 33490943
Alignment:
| Q |
1 |
ctacccagagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagctt |
100 |
Q |
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| T |
33491178 |
ctacccagagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttgattatatatagaaatgtagctt |
33491079 |
T |
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| Q |
101 |
ccttgacacttctgtaaatcattaaggtctgcaagattatgagacaagactcccacaacagcaccaattccctgcaaagaaactactacatgatgatact |
200 |
Q |
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| T |
33491078 |
ccttgacatttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaacagcaccaaattcctgtaaagaaattattacatgctgataca |
33490979 |
T |
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| Q |
201 |
gtttcaaacatacaaagatcacataaaaggattcta |
236 |
Q |
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| T |
33490978 |
gtttcaaacgagcaaagattacataaaaggaatcta |
33490943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 33419974 - 33419821
Alignment:
| Q |
7 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
106 |
Q |
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| T |
33419974 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
33419875 |
T |
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| Q |
107 |
cacttctgtaaatcattaaggtctgcaagattatgagacaagactcccacaaca |
160 |
Q |
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| T |
33419874 |
catttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaaca |
33419821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 33412837 - 33412742
Alignment:
| Q |
7 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
106 |
Q |
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| T |
33412837 |
agagctagtaaagattaaaa-tatcatgccaacaattgatcaagaactaacttgatgagcataagaa---tggttatatatagaaatgtagcttccttga |
33412742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 33419823 - 33419765
Alignment:
| Q |
212 |
acaaagatcacataaaaggattctaatacaaaaatactaccttatattttgtaacatta |
270 |
Q |
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| T |
33419823 |
acaaagattacataaaaggaatctattacaaaaatattatcttatattttgtaacatta |
33419765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 33419761 - 33419721
Alignment:
| Q |
260 |
ttgtaacattaagcatgatatagtcagggttagaaacatta |
300 |
Q |
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| T |
33419761 |
ttgtaacattaaacatgatatagtcagggttagaaacatta |
33419721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 33412744 - 33412710
Alignment:
| Q |
140 |
tgagacaagactcccacaacagcaccaattccctg |
174 |
Q |
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| T |
33412744 |
tgagacaagactcccacaacagctccaattccctg |
33412710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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