View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415eco1 (Length: 297)
Name: NF0415eco1
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415eco1 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 15182623 - 15182358
Alignment:
| Q |
9 |
cctagactctctacttctccacatttgaaatatgcgagcttcagctattagactatttnnnnnnnnnnntcacactatcatatnggactctcgcccttta |
108 |
Q |
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| T |
15182623 |
cctagactctctacttctccacatttgaaatgtgcgagcttcagctattagactatttaaaaaaaaaa-tcacactatcatattggactctcgcccttta |
15182525 |
T |
|
| Q |
109 |
ataaaaataaaagcactataatatcatattattatanggttttaatttatacncacctatagttngtttcannnnnnnacatatattaatatacnccgat |
208 |
Q |
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||||||| |||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||| |
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| T |
15182524 |
ataaaaaaaaaaacactataatatcatattattatatgattttaatttatacacacctatagtttatttcatttttttacatatattaatatacaccgat |
15182425 |
T |
|
| Q |
209 |
ngtttactttannnnnnnacacatatatccaatcaaataatttcangataccacattttatatctaa |
275 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||| |||| || ||||||||||||| |
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| T |
15182424 |
tgtttactttatttttttacatatatatccaatcaaataatttcatgatatcatattttatatctaa |
15182358 |
T |
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