View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415eco10 (Length: 209)
Name: NF0415eco10
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415eco10 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 1239148 - 1238951
Alignment:
| Q |
9 |
cactcgtggtgatgatgatgaagaacaatttgtgtaatgtagtgcaaggtttgaagccaacgttgttaatggttatggtgcaaatagcatttgctggtgt |
108 |
Q |
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| T |
1239148 |
cactcgtggtgatgatgatgaagaacaatttgtgtaatgtagtgcaaggtttgaagccaacgttgttaatggttatggtgcaaatagcatttgctggtgt |
1239049 |
T |
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| Q |
109 |
taatgttctatacaagttagctgtaaacgacggcatgagtttaaggattgttgttgcctaccgttttatatttgcaactgctttcatagctccaattg |
206 |
Q |
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| T |
1239048 |
taatgttctatacaagttagctgtaaacgatggcatgagtttaaggattgttgttgcctaccgttttatatttgcaactgctttcatagctccaattg |
1238951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 920174 - 920028
Alignment:
| Q |
56 |
ggtttgaagccaacgttgttaatggttatggtgcaaatagcatttgctggtgttaatgttctatacaagttagctgtaaacgacggcatgagtttaagga |
155 |
Q |
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|||||||||||||||||||||||| | ||||| |||||||||||||| ||| ||||||||| |||||| | |||||||| || ||||||| ||||||| |
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| T |
920174 |
ggtttgaagccaacgttgttaatgatattggtgaaaatagcatttgcttgtgctaatgttctctacaagcttgctgtaaatgatggcatgaacttaagga |
920075 |
T |
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| Q |
156 |
ttgttgttgcctaccgttttatatttgcaactgctttcatagctcca |
202 |
Q |
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| T |
920074 |
ttgttgttgcctaccgttttatatttgcaactcttttcatagctcca |
920028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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