View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415eco2 (Length: 389)
Name: NF0415eco2
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415eco2 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 31202576 - 31202197
Alignment:
| Q |
13 |
gaggcagagtatgaaggatatataatcaattacatagaagttatgtcaaaagcaggagcatgtgagcctgcacgttctggttcagcggaaattggtggtt |
112 |
Q |
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| T |
31202576 |
gaggcagagtatgaaggatatataatcaattacatagaagttatgtcaaaggcaggagcatgtgagcctgcacgttcttgttcagcggacttttttggtt |
31202477 |
T |
|
| Q |
113 |
taggagga---ggtgcatg---tgacgcttccacacaagacaatgtatgaggttctgcaagagttgttttcccttgttttggttgattagacaaaagcat |
206 |
Q |
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| T |
31202476 |
ttggtggttttggtgcatgatgtggtacttccacacaagacaatgtatgaggttctgcaagagttgttttcccttgttttggttgattagacaaaagcat |
31202377 |
T |
|
| Q |
207 |
tccctttgcgcctgctgataaagcttcctgaccctcagcaactgattttatatttccttctcgaatgcactccactattttccccttcacttttgaagga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202376 |
tccctttgcgcctgctgataaagcttcctgaccctcagcaactgattttatatttccttctcgaatgcactccactattttccccttcacttttgaagga |
31202277 |
T |
|
| Q |
307 |
tcaagtgttcctgccctacaaagtcgtctacaacgaca----tataacatataaaaagtgtaagaaacaatcatttaatta |
383 |
Q |
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| T |
31202276 |
tcaagtgttcctggcttacaaaattgtctacaacgacatatatataacatat-aaaagtgtaagaaacaatcatttaatta |
31202197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 31062842 - 31062975
Alignment:
| Q |
183 |
ttttggttgattagacaaaagcattccctttgcgcctgctgataaagcttcctgaccctcagcaactgattttatatttccttctcgaatgcactccact |
282 |
Q |
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| T |
31062842 |
ttttggttgattttccaaaaacattccctttgcacctgcagataaagcttcctgaccctcagcaactgattttattttcccttctcgagcacatgccact |
31062941 |
T |
|
| Q |
283 |
attttccccttcacttttgaaggatcaagtgttc |
316 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
31062942 |
attttacccttcacttttgaaggatcaagtgttc |
31062975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 31107842 - 31107950
Alignment:
| Q |
208 |
ccctttgcgcctgctgataaagcttcctgaccctcagcaactgattttatatttccttctcgaatgcactccactattttccccttcacttttgaaggat |
307 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||| || |||||||||||||||| |
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| T |
31107842 |
ccctttgcacctgcagataaagcttcctgaccctcagcaactgattttattttcccttctcgatcgcatgccactattttaccattcacttttgaaggat |
31107941 |
T |
|
| Q |
308 |
caagtgttc |
316 |
Q |
| |
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||||||||| |
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|
| T |
31107942 |
caagtgttc |
31107950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 31145448 - 31145563
Alignment:
| Q |
213 |
tgcgcctgctgataaagcttcctgaccctcagcaactgattttatatttccttctcgaatgcactccactattttccccttcacttttgaaggatcaagt |
312 |
Q |
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||||||||| ||||||||||||||||| ||||||| ||| ||||| || ||||||||| ||| |||||| ||| || |||||||||||||||||||| |
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| T |
31145448 |
tgcgcctgcagataaagcttcctgaccttcagcaattgaatttattttcccttctcgatcacacgccactactttaccattcacttttgaaggatcaagc |
31145547 |
T |
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| Q |
313 |
gttcctgccctacaaa |
328 |
Q |
| |
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||||||| ||||||| |
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| T |
31145548 |
gttcctggtctacaaa |
31145563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 31163272 - 31163387
Alignment:
| Q |
213 |
tgcgcctgctgataaagcttcctgaccctcagcaactgattttatatttccttctcgaatgcactccactattttccccttcacttttgaaggatcaagt |
312 |
Q |
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| T |
31163272 |
tgcgcctgcagataaagcttcctgaccttcagcaattgaatttattttcccttctcgatcacacgccactactttaccattcacttttgaaggatcaagc |
31163371 |
T |
|
| Q |
313 |
gttcctgccctacaaa |
328 |
Q |
| |
|
||||||| ||||||| |
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| T |
31163372 |
gttcctggtctacaaa |
31163387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 31050522 - 31050565
Alignment:
| Q |
274 |
cactccactattttccccttcacttttgaaggatcaagtgttcc |
317 |
Q |
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| T |
31050522 |
cactccactattttaccactcacttttgaaggatcaagtgttcc |
31050565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 31914235 - 31914176
Alignment:
| Q |
198 |
caaaagcattccctttgcgcctgctgataaagcttcctgaccctcagcaactgattttat |
257 |
Q |
| |
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||||| || ||||||||| |||||||||||||||||||||||||| |||| ||||||||| |
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| T |
31914235 |
caaaatcactccctttgcacctgctgataaagcttcctgaccctcggcaattgattttat |
31914176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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