View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0415eco21 (Length: 474)

Name: NF0415eco21
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0415eco21
NF0415eco21
[»] chr2 (2 HSPs)
chr2 (4-207)||(6922390-6922593)
chr2 (273-436)||(6922659-6922822)
[»] chr4 (1 HSPs)
chr4 (125-203)||(49131639-49131717)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 6922390 - 6922593
Alignment:
Q  4 caattgagcagcataaggatattgagaatggacaaactaatgggtttcagtatttgcaagaacctttcattcagcaaggaaaggatgcatgtaaagaagt 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6922390 caattgagcagcataaggatattgagaatggagaaactaatgggtttcagtatttgcaagaacctttcattcaacaaggaaaggatgcatgtaaagaagt 6922489  T
Q  104 tggatcagataaaagtgtgggaaatggatccattggaatggttttgcttagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagt 203  Q
    |||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6922490 tggatcagataaaagtatggaaaatggatccattggaatggttctgcttagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagt 6922589  T
Q  204 actt 207  Q
    ||||    
T  6922590 actt 6922593  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 273 - 436
Target Start/End: Original strand, 6922659 - 6922822
Alignment:
Q  273 atcattcggttttaacataaagaactttgataatctagagttcaatatgatgataatttaagtatagtcaatgattgttctaatcacgattcgaattcaa 372  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  6922659 atcattcggtttttacataaagaactttgataatctagagttcaatatgattataatttaagtataatcaatgattgttctaatcacgattcaaattcaa 6922758  T
Q  373 gttcaccaaaatgaattgtgtttacgtgtgcattagattaaacatcatacattcattcactttt 436  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6922759 gttcaacaaaatgaattgtgtttacgtgtgcattagattaaacaacatacattcattcactttt 6922822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 49131639 - 49131717
Alignment:
Q  125 aaatggatccattggaatggttttgcttagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagt 203  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49131639 aaatggatccattggaatggttctgctcagcacatttgttgctgtttgcggttctttttcatttggaacttgtgtaagt 49131717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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