View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415eco26 (Length: 310)
Name: NF0415eco26
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415eco26 |
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| [»] scaffold1130 (1 HSPs) |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 5751261 - 5751560
Alignment:
| Q |
8 |
attataggggagtggtcccactttgcttatattattgagaagatcttagttaatcaagattacgattattaaagtttctcttgacagaaattattaatat |
107 |
Q |
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| T |
5751261 |
attataggggagtggtcccactttgcttatattattgagaagatcttagttaatcaagattacgattattaaagtttctcttgacagaaattattaatat |
5751360 |
T |
|
| Q |
108 |
gatgcatgaacaattttatcttaaaaaattgtacgaagaaacaaagtataaggtgataaggtcaaaaggtcaacgatcgagaatagatagctgacacaat |
207 |
Q |
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| T |
5751361 |
gatgcatgaacaattttatcttaaaaaattgtacgaagaaacaaagtataaggtgataaggtcaaaaggtcaacgattgagaatagatagctgacacaat |
5751460 |
T |
|
| Q |
208 |
taaatataaatcaaatacatcaattttaattgacatatttatctcttatataaaagaccggaagaagtattattttgttgaagaaataatactgcaattg |
307 |
Q |
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| T |
5751461 |
taaatataaatcaaatgcatcaatattaattgacacatttgtctcttatataaaagatcgaaggaagtattattttgttgaaaaaataatactacaattg |
5751560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1130 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1130
Description:
Target: scaffold1130; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 2688 - 2640
Alignment:
| Q |
219 |
caaatacatcaattttaattgacatatttatctcttatataaaagaccg |
267 |
Q |
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| T |
2688 |
caaatacatcaattttaattgacaaatttatctcttataaaaaagaccg |
2640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 40321 - 40369
Alignment:
| Q |
219 |
caaatacatcaattttaattgacatatttatctcttatataaaagaccg |
267 |
Q |
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| T |
40321 |
caaatacatcaattttaattgacaaatttatctcttataaaaaagaccg |
40369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 278623 - 278671
Alignment:
| Q |
219 |
caaatacatcaattttaattgacatatttatctcttatataaaagaccg |
267 |
Q |
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| T |
278623 |
caaatacatcaattttaattgaccaatttatctcttataaaaaagaccg |
278671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 13412105 - 13412153
Alignment:
| Q |
219 |
caaatacatcaattttaattgacatatttatctcttatataaaagaccg |
267 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
13412105 |
caaatacatcaattttaattgaccaatttatctcttataaaaaagaccg |
13412153 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 39257339 - 39257289
Alignment:
| Q |
217 |
atcaaatacatcaattttaattgacatatttatctcttatataaaagaccg |
267 |
Q |
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|||||||||||||| ||| |||||| ||||||||||||||| ||| ||||| |
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| T |
39257339 |
atcaaatacatcaactttgattgacttatttatctcttataaaaatgaccg |
39257289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 30774189 - 30774233
Alignment:
| Q |
213 |
ataaatcaaatacatcaattttaattgacatatttatctcttata |
257 |
Q |
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| T |
30774189 |
ataaattaaatacatcaattttggttgacatatttatctcttata |
30774233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 47678860 - 47678815
Alignment:
| Q |
212 |
tataaatcaaatacatcaattttaattgacatatttatctcttata |
257 |
Q |
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| T |
47678860 |
tataaatcaaatacatcaattttagttgaccaatttatttcttata |
47678815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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