View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415eco3 (Length: 285)
Name: NF0415eco3
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415eco3 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 15970175 - 15970286
Alignment:
| Q |
170 |
gtagatacgagaatcaaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctca |
269 |
Q |
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| T |
15970175 |
gtagatacgagaatcaaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctca |
15970274 |
T |
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| Q |
270 |
tgtccttgaatt |
281 |
Q |
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|||||||||||| |
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| T |
15970275 |
tgtccttgaatt |
15970286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 33672318 - 33672215
Alignment:
| Q |
178 |
gagaatcaaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctcatgtccttg |
277 |
Q |
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||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
33672318 |
gagaatcaaaaaagaagagactggaacacttttggtcaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagcacatgttcttg |
33672219 |
T |
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| Q |
278 |
aatt |
281 |
Q |
| |
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|||| |
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| T |
33672218 |
aatt |
33672215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 15970015 - 15970066
Alignment:
| Q |
10 |
accaacaacaaagacatgatgaacacaaaccctatgatcaacataacaaacc |
61 |
Q |
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| T |
15970015 |
accaacaacaaagacatgatgaacacaaaccctatgatcaacataacaaacc |
15970066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 37974946 - 37975040
Alignment:
| Q |
184 |
caaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctcatgtccttga |
278 |
Q |
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| T |
37974946 |
caaaagagacgtgattggaacacttttggtcaatacctaaaaaaccatcgtccaccattaacactctcacgttgtagtggtgcacatgttcttga |
37975040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 32002379 - 32002323
Alignment:
| Q |
184 |
caaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccacca |
240 |
Q |
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||||||||||||||||||||||| |||||||||||| |||| || || ||||||||| |
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| T |
32002379 |
caaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccacca |
32002323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 39556377 - 39556413
Alignment:
| Q |
183 |
tcaaaagagaagagattggaacacatttggacaatac |
219 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||| |
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| T |
39556377 |
tcaaaagagaagagattggaacacttttggtcaatac |
39556413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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