View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415eco4 (Length: 530)
Name: NF0415eco4
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415eco4 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 9 - 528
Target Start/End: Original strand, 40472411 - 40472931
Alignment:
| Q |
9 |
gaagtgtatgatatgtgtgtgtagatactgaccatgtttgccaacagagagacggttgtttgtgacacaaattttgccattggtttgtaaatgagagatt |
108 |
Q |
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| T |
40472411 |
gaagtgtatgatatgtgtgtgtagatactgaccatgtttgccaacagagagacggttgtttgtgacacaaattttgccattggtttgtaaatgagagatt |
40472510 |
T |
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| Q |
109 |
gattggtatcaggtttgggatccatgtcagaagaactgctaagtgcacctccagaaatattagcctgtaattgataaaaacacaacatacattagaaacc |
208 |
Q |
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| T |
40472511 |
gattggtatcaggtttgggatccatgtcagaagaactgctaagtgcacctccagaaatattaacctgtaattggtaaaaacacaacatacattagaaacc |
40472610 |
T |
|
| Q |
209 |
aagaagcatttcaaaacagtatggcaatgttttaaaaaccaaaacggacatcaatccggcatgacctctaggtcatgattcaaccgtcttaaaccactcg |
308 |
Q |
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| T |
40472611 |
aagaagcatttcaaaacagtatggcaatgttttaaaaaccaaaacggacatcaatccggcatgacctctaggtcatgattcaaccgtcttaaaccgctcg |
40472710 |
T |
|
| Q |
309 |
aatcgagacgaaaccaaaatcgaaccgccaaaataaccacaccatagtagtggtccgttcaaggttcactcggttggaacttccag-tcggtttttaaaa |
407 |
Q |
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| T |
40472711 |
aatcgagacgaaaccaaaatcgaactgccaaaataaccacaccatagtagtggtccgttcaaggttcactcggttggaacttccagttcagtttttaaaa |
40472810 |
T |
|
| Q |
408 |
cactgcattatggtatgttgcactgaatgttcacctgagaaggggggatattcattgctggcttgaacctcactgtctttggcctaatggcggatattgt |
507 |
Q |
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| T |
40472811 |
cactgcattatggtatgttgcactgaatgttcacctgagaaggggggatattcattgctggcttgaacctcactgtctttggcctaatggcggatattgt |
40472910 |
T |
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| Q |
508 |
agtttgagaagatgcaattgg |
528 |
Q |
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| T |
40472911 |
agtttgagaagatgcaattgg |
40472931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 15190591 - 15190546
Alignment:
| Q |
232 |
gcaatgttttaaaaaccaaaacggacatcaatccggcatgacctct |
277 |
Q |
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|||||||||||||||||||| | |||||||| |||||| ||||||| |
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| T |
15190591 |
gcaatgttttaaaaaccaaagcagacatcaaaccggcaagacctct |
15190546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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