View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0415eco5 (Length: 466)

Name: NF0415eco5
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0415eco5
NF0415eco5
[»] chr4 (3 HSPs)
chr4 (200-461)||(26059930-26060191)
chr4 (125-288)||(11650156-11650319)
chr4 (18-67)||(11650317-11650366)
[»] chr8 (5 HSPs)
chr8 (10-200)||(41831359-41831549)
chr8 (125-288)||(41837145-41837308)
chr8 (18-67)||(41837306-41837355)
chr8 (390-450)||(41779319-41779379)
chr8 (420-460)||(12575942-12575982)
[»] chr2 (2 HSPs)
chr2 (330-460)||(23674019-23674149)
chr2 (420-460)||(32576328-32576368)
[»] scaffold0567 (1 HSPs)
scaffold0567 (390-460)||(6452-6522)
[»] chr7 (3 HSPs)
chr7 (395-460)||(23313844-23313909)
chr7 (400-450)||(23107533-23107583)
chr7 (421-456)||(9765361-9765396)
[»] chr6 (5 HSPs)
chr6 (327-389)||(3827222-3827284)
chr6 (395-456)||(16883214-16883275)
chr6 (420-460)||(1838036-1838076)
chr6 (420-452)||(7770051-7770083)
chr6 (420-460)||(19665307-19665347)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 200 - 461
Target Start/End: Original strand, 26059930 - 26060191
Alignment:
Q  200 tatatataagaagctagccgcaaaaaaggaatcattaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagctacggactgcac 299  Q
    |||||| ||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26059930 tatataaaagaagctagccgcaaaaaaggaatcatcggactttggcacatcacggtttgggagatccaaaagttgaggagaaagaagctacggactgcac 26060029  T
Q  300 aactagaagaaataacagcaacacagagataagaatttgataaactattatggtatcaatgaatttctcttttgttctacgttgtttattttctttaata 399  Q
    | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26060030 agctagaagaaataacggcaacacaaagataagaatttgataaactattatggtatcaatgaatttctcttttgttctacgttgtttattttctttaata 26060129  T
Q  400 atgagtagctaattttctaagtggttgagacttagatgaatatgatgtaattctatgggaat 461  Q
    ||||||||||||||||  || ||||||||||||||||||||||||| ||||| |||| ||||    
T  26060130 atgagtagctaatttttcaattggttgagacttagatgaatatgatataattgtatgagaat 26060191  T

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Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 125 - 288
Target Start/End: Complemental strand, 11650319 - 11650156
Alignment:
Q  125 actatttaatagtgcataacattatgtgtccgtctatgtttaatgaataccatacgtgtctacaataacaactagtatatataagaagctagccgcaaaa 224  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11650319 actatttaatagtgcataacatcatgtgtccgtctatgttgaatgaataccatacgtgtctacaataacaactagtatatataagaagctaaccgcaaaa 11650220  T
Q  225 aaggaatcattaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagct 288  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11650219 aaggaatcatcaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagct 11650156  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 11650366 - 11650317
Alignment:
Q  18 ataggggtcaactatttcatcctagtattgaatgtggatggaatttaact 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11650366 ataggggtcaactatttcatcctagtattgaatgtggatggaatttaact 11650317  T

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Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 41831549 - 41831359
Alignment:
Q  10 ccatagttataggggtcaactatttcatcctagtattgaatgtggatggaatttaacttgtcatcttcgcaacgacaacgctcacccgttttcagatcgt 109  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41831549 ccatagtgataggggtcaactatttcatcctagtattgaatgtggatggaatttaacttgtcatctccgcaacgacaacgctcacccgttttcagatcgt 41831450  T
Q  110 cactcctacgatatgactatttaatagtgcataacattatgtgtccgtctatgtttaatgaataccatacgtgtctacaataacaactagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41831449 cactcctacgatatgactatttaatagtgcataacattatgtgtccgtctatgttgaatgaataccatacgtgtctacaataacaactagt 41831359  T

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Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 125 - 288
Target Start/End: Complemental strand, 41837308 - 41837145
Alignment:
Q  125 actatttaatagtgcataacattatgtgtccgtctatgtttaatgaataccatacgtgtctacaataacaactagtatatataagaagctagccgcaaaa 224  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41837308 actatttaatagtgcataacatcatgtgtccgtctatgttgaatgaataccatacgtgtctacaataacaactagtatatataagaagctaaccgcaaaa 41837209  T
Q  225 aaggaatcattaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagct 288  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41837208 aaggaatcatcaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagct 41837145  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 41837355 - 41837306
Alignment:
Q  18 ataggggtcaactatttcatcctagtattgaatgtggatggaatttaact 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41837355 ataggggtcaactatttcatcctagtattgaatgtggatggaatttaact 41837306  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 41779379 - 41779319
Alignment:
Q  390 ttctttaataatgagtagctaattttctaagtggttgagacttagatgaatatgatgtaat 450  Q
    |||| |||| |||||| |||||||||  ||||||||||||||||||||||| |||||||||    
T  41779379 ttctataatcatgagttgctaatttttcaagtggttgagacttagatgaatctgatgtaat 41779319  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 12575982 - 12575942
Alignment:
Q  420 gtggttgagacttagatgaatatgatgtaattctatgggaa 460  Q
    ||||||||||||||||||||| ||||||||| |||| ||||    
T  12575982 gtggttgagacttagatgaatctgatgtaatcctataggaa 12575942  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 460
Target Start/End: Complemental strand, 23674149 - 23674019
Alignment:
Q  330 aagaatttgataaactattatggtatcaatgaatttctcttttgttctacgttgtttattttctttaataatgagtagctaattttctaagtggttgaga 429  Q
    ||||||||||||| ||||   |||||| |||||||||||||| ||| || ||||||||||| || |||| ||||||||||||||||  |  ||||| ||     
T  23674149 aagaatttgataagctatcgcggtatcgatgaatttctctttggttttatgttgtttatttgctctaattatgagtagctaatttttcatatggttaagt 23674050  T
Q  430 cttagatgaatatgatgtaattctatgggaa 460  Q
     | ||| |||| |||||||||||||||||||    
T  23674049 ttgagaagaatctgatgtaattctatgggaa 23674019  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 32576368 - 32576328
Alignment:
Q  420 gtggttgagacttagatgaatatgatgtaattctatgggaa 460  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  32576368 gtggttgagacttagatgaatatgatgtaatcctataggaa 32576328  T

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Target: scaffold0567 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 460
Target Start/End: Complemental strand, 6522 - 6452
Alignment:
Q  390 ttctttaataatgagtagctaattttctaagtggttgagacttagatgaatatgatgtaattctatgggaa 460  Q
    |||| |||| ||||||||||||||||| |||||||||||| |||||||||| |||||||||  ||||||||    
T  6522 ttctataattatgagtagctaattttccaagtggttgagatttagatgaatctgatgtaatcttatgggaa 6452  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 23313909 - 23313844
Alignment:
Q  395 taataatgagtagctaattttctaagtggttgagacttagatgaatatgatgtaattctatgggaa 460  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||  ||||||||    
T  23313909 taatcatgagtagctaattttccaagtggttgagacttagatgaatccgatgtaatcttatgggaa 23313844  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 450
Target Start/End: Original strand, 23107533 - 23107583
Alignment:
Q  400 atgagtagctaattttctaagtggttgagacttagatgaatatgatgtaat 450  Q
    |||||||||||| |||||  ||||||||||||||||||||| |||||||||    
T  23107533 atgagtagctaaatttctttgtggttgagacttagatgaatttgatgtaat 23107583  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 456
Target Start/End: Original strand, 9765361 - 9765396
Alignment:
Q  421 tggttgagacttagatgaatatgatgtaattctatg 456  Q
    |||||||||||||||||||||||||||||| |||||    
T  9765361 tggttgagacttagatgaatatgatgtaatcctatg 9765396  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 3827284 - 3827222
Alignment:
Q  327 gataagaatttgataaactattatggtatcaatgaatttctcttttgttctacgttgtttatt 389  Q
    |||||| ||||||||| ||| |  |||||| |||||||||||||| |||||| ||||||||||    
T  3827284 gataaggatttgataagctactgcggtatcgatgaatttctctttggttctatgttgtttatt 3827222  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 16883214 - 16883275
Alignment:
Q  395 taataatgagtagctaattttctaagtggttgagacttagatgaatatgatgtaattctatg 456  Q
    |||| ||| ||||||||||||| ||| |||| ||||||| |||||| |||||||||| ||||    
T  16883214 taattatgggtagctaattttccaaggggttaagacttaaatgaatctgatgtaattttatg 16883275  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 1838036 - 1838076
Alignment:
Q  420 gtggttgagacttagatgaatatgatgtaattctatgggaa 460  Q
    |||||||||||| |||||||| ||||||||| |||||||||    
T  1838036 gtggttgagactgagatgaatctgatgtaatcctatgggaa 1838076  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 7770083 - 7770051
Alignment:
Q  420 gtggttgagacttagatgaatatgatgtaattc 452  Q
    ||||||||||||||||||||| |||||||||||    
T  7770083 gtggttgagacttagatgaatctgatgtaattc 7770051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 19665347 - 19665307
Alignment:
Q  420 gtggttgagacttagatgaatatgatgtaattctatgggaa 460  Q
    |||||||||||| |||||||| ||||||||| |||||||||    
T  19665347 gtggttgagactgagatgaatctgatgtaatcctatgggaa 19665307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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