View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415eco6 (Length: 553)
Name: NF0415eco6
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415eco6 |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Complemental strand, 25059260 - 25058722
Alignment:
| Q |
8 |
aaccagacttcaaatcaaaacttacattgacaacgagctcaaaagaggtggtgaaatatcaccttcacttctcaaggcaatcaatgatgcaaaattatcc |
107 |
Q |
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||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25059260 |
aaccagacttcaaatcaaaacttacatcgacaatgagctcgaaagaggtgatgaaatatcaccttcacttctcaaggcaatcgatgatgcaaaattatcc |
25059161 |
T |
|
| Q |
108 |
gtaattatcttttcggaaaattatgcttcttctagatggtgtttggaggagcttgtgaaaatcttggaatgtaagaaaaataatgggcaaattttagttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25059160 |
gtaattatcttttcggaaaattatgcttcttctagatggtgtttggaggagcttgtgaaaatcttggaatgtaagaaaaataatgggcaaattttagttc |
25059061 |
T |
|
| Q |
208 |
ctattttctaccatgttaacccaacaaatgtaaggaagcaaacgggtagctatgcacttgctttggcggagcatgaacaacgttgggacaagaataaggt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
25059060 |
ctattttctaccatgttaacccaacaaatgtaaggaatcgaacgggtagctatgcacttgctttggcggagcatgaaaaacgtagggacaagaataaggt |
25058961 |
T |
|
| Q |
308 |
tcaaacatggcggctagctttggaagaagctgccaatttctctggctgggattgcttgggcacaaggtaattaatattcaccttcatcacataaattttg |
407 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25058960 |
tcaaacatggcggctagctttgaaagaagctgccaatttctctggctgggattgcttgggcacaaggtaattaatattcaccttcatcacataaattttg |
25058861 |
T |
|
| Q |
408 |
ctctaaccccaaattttctatttgaagattgatgtaattaatcatcaataatattaattcctgtgttaattagtatatatttggcacaaagtttatgata |
507 |
Q |
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| T |
25058860 |
ctctaaccccaaattttctatttgaagattgatgtaattaatcttcaataatattaattcctgtgttaattagtatatatttggcacaaagtttatgata |
25058761 |
T |
|
| Q |
508 |
aaggtttatacttctttacacttgcttgtacaagaatca |
546 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
25058760 |
aaggtttatacttctttacacttgcttgtacaagaatca |
25058722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 25093657 - 25093274
Alignment:
| Q |
8 |
aaccagacttcaaatcaaaacttacattgacaacgagctcaaaagaggtggtgaaatatcaccttcacttctcaaggcaatcaatgatgcaaaattatcc |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25093657 |
aaccagacttcaaatcaaaacttacatcgacaatgagctcgaaagaggtgatgaaatatcaccttcacttctcaaggcaatcgatgatgcaaaattatcc |
25093558 |
T |
|
| Q |
108 |
gtaattatcttttcggaaaattatgcttcttctagatggtgtttggaggagcttgtgaaaatcttggaatgtaagaaaaataatgggcaaattttagttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25093557 |
gtaattatcttttcggaaaattatgcttcttctagatggtgtttggaggagcttgtgaaaatcttggaatgtaagaaaaataatgggcaaattttagttc |
25093458 |
T |
|
| Q |
208 |
ctattttctaccatgttaacccaacaaatgtaaggaagcaaacgggtagctatgcacttgctttggcggagcatgaacaacgttgggacaagaataaggt |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||| ||| ||||| |||||| | ||||||| |
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| T |
25093457 |
ctattttctaccatgttaacccaacaaatgtaaggaatcaaacgggtagctatgggctttctttggcagagcaagaaaaacgtagggacatgcataaggt |
25093358 |
T |
|
| Q |
308 |
tcaaacatggcggctagctttggaagaagctgccaatttctctggctgggattgcttgggcacaaggtaattaatattcacctt |
391 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25093357 |
tcaaacatggcggctagctttgacagaagctgccaatttctctggctgggattgcttgggcacaaggtaattaatatttacctt |
25093274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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