View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0415eco7 (Length: 507)

Name: NF0415eco7
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0415eco7
NF0415eco7
[»] chr7 (15 HSPs)
chr7 (63-466)||(31540644-31541048)
chr7 (146-467)||(31532102-31532426)
chr7 (113-466)||(31573036-31573389)
chr7 (148-466)||(33305351-33305666)
chr7 (240-467)||(31594857-31595084)
chr7 (198-445)||(31618028-31618275)
chr7 (198-467)||(31614299-31614568)
chr7 (195-349)||(31439336-31439490)
chr7 (195-451)||(31608012-31608271)
chr7 (196-445)||(31585163-31585415)
chr7 (194-351)||(31575751-31575908)
chr7 (236-451)||(31604462-31604677)
chr7 (464-504)||(31532641-31532681)
chr7 (464-496)||(31541298-31541330)
chr7 (388-467)||(31575948-31576027)
[»] chr8 (1 HSPs)
chr8 (7-102)||(10378551-10378646)
[»] chr1 (2 HSPs)
chr1 (210-467)||(52174512-52174769)
chr1 (464-504)||(52174223-52174263)
[»] scaffold0394 (1 HSPs)
scaffold0394 (195-359)||(1697-1861)
[»] chr4 (2 HSPs)
chr4 (195-359)||(15063673-15063837)
chr4 (157-355)||(29083594-29083790)
[»] scaffold0254 (1 HSPs)
scaffold0254 (195-277)||(1751-1833)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 63 - 466
Target Start/End: Original strand, 31540644 - 31541048
Alignment:
Q  63 tacaatcacattttcgcttttg-cattgctaagctttttcgattttatggaatcattcttcagttaaggtattgagtttttctctaacaaattgctagaa 161  Q
    ||||||||||||||| |||||| | ||||| | ||| |  | |||||||||| ||||||||| ||| | |  ||||||| |||||||||||||||| |||    
T  31540644 tacaatcacattttcacttttgtctttgctgaacttatctggttttatggaaccattcttcaattaggatgctgagtttgtctctaacaaattgctggaa 31540743  T
Q  162 gacacatgtgaagtttgtaatgatgacatttgaggagaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttctatta 261  Q
    |||| || ||||||||| |||||||||| |  |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||    
T  31540744 gacaaatatgaagtttgcaatgatgacaatgcaggagaatataagaaaggctttggaggatatggcaccgactgaagtggtccttgtagcatttctaata 31540843  T
Q  262 ctctattcatagatggtctatctaatggatttgtttgaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttcctttgagattac 361  Q
    || || |||| |||||||||||   ||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||||| || |    
T  31540844 ctttactcattgatggtctatcggctggatttgtttgaatgcaccatagactcaccatagtaatcattcttaccatatcattttcttcctttgagtttgc 31540943  T
Q  362 taaacaatctacattgttattatttagctcgagatccttataaattcaatcaggaaagaacatttcagaagtacatgaccctccaatgtcattattcttt 461  Q
    ||||||||   ||  |||||||  | |||| |||||||||||||| ||||| |||||  |||||||||||||||||||||||||| |||||| |||||||    
T  31540944 taaacaattagcaaggttattagcttgctcaagatccttataaatccaatctggaaaacacatttcagaagtacatgaccctccagtgtcataattcttt 31541043  T
Q  462 cttcc 466  Q
    |||||    
T  31541044 cttcc 31541048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 146 - 467
Target Start/End: Original strand, 31532102 - 31532426
Alignment:
Q  146 taacaaattgctagaagacacatgtgaagtttgtaatgatgacatttgaggagaatataagaaaggctttggaggataaggcactgactgaagtggtcct 245  Q
    ||||| |||||| |||||||||| ||||||||||| |||||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31532102 taacatattgctggaagacacatatgaagtttgtactgatggaattttaggagaatataagaaaggctttggaggatatggcactgactgaagtggtcct 31532201  T
Q  246 tgtagcatttctattactctattcatagatggtctatctaatggatttgtttgaatgcaccatagactaaccatagtaatctttcttaccgcatcatttt 345  Q
    |||||||||||| ||||| || |||| |||||||||||  |||| ||||||||||||||||||| ||| ||||||||||||||||| |||  ||||||||    
T  31532202 tgtagcatttctgttactttactcattgatggtctatcggatgggtttgtttgaatgcaccataaactcaccatagtaatctttctcaccatatcatttt 31532301  T
Q  346 cttcctttgagattactaaacaatctacattgttattatt---tagctcgagatccttataaattcaatcaggaaagaacatttcagaagtacatgaccc 442  Q
    |||||| |||  || ||||| |||  |||  |||||||||   | | || |||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  31532302 cttcctctgaattttctaaataattcacaaggttattattaccttgttcaagatccttataaatccagtcaggaaagtacatttcagaagtacatgaccc 31532401  T
Q  443 tccaatgtcattattctttcttcct 467  Q
    |||| |||||| |||||||||||||    
T  31532402 tccagtgtcataattctttcttcct 31532426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 113 - 466
Target Start/End: Complemental strand, 31573389 - 31573036
Alignment:
Q  113 atcattcttcagttaaggtattgagtttttctctaacaaattgctagaagacacatgtgaagtttgtaatgatgacatttgaggagaatataagaaaggc 212  Q
    ||||||||||||| | | |||||| |||||||||||||||||||| |||||| ||| |||| |||||||||||| ||||| |||||||||||  | ||||    
T  31573389 atcattcttcagtaatgttattgaatttttctctaacaaattgctggaagacgcatatgaactttgtaatgatggcattttaggagaatatagaataggc 31573290  T
Q  213 tttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatggtctatctaatggatttgtttgaatgcaccatagac 312  Q
    |||||||| || |||||||| | ||||||||||||||||||||||| |||| || |||| ||||||||||||||||| || |||||||||||||||||||    
T  31573289 tttggagggtatggcactgaatcaagtggtccttgtagcatttctaatactttactcatcgatggtctatctaatgggttcgtttgaatgcaccatagac 31573190  T
Q  313 taaccatagtaatctttcttaccgcatcattttcttcctttgagattactaaacaatctacattgttattatttagctcgagatccttataaattcaatc 412  Q
    |||||||||| | ||||||||||  |||| |||||||||  ||| || |||||| ||  |||  ||||||| ||||||| ||||| |||||||| |||||    
T  31573189 taaccatagttaactttcttaccatatcagtttcttcctcggagtttgctaaaccattcacaaagttattacttagctcaagatcattataaatccaatc 31573090  T
Q  413 aggaaagaacatttcagaagtacatgaccctccaatgtcattattctttcttcc 466  Q
     |||||| |||||||||||||||| ||||||||  ||||||  |||||||||||    
T  31573089 tggaaagtacatttcagaagtacacgaccctcctgtgtcatagttctttcttcc 31573036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 148 - 466
Target Start/End: Complemental strand, 33305666 - 33305351
Alignment:
Q  148 acaaattgctagaagacacatgtgaagtttgtaatgatgacatttgaggagaatataagaaaggctttggaggataaggcactgactgaagtggtccttg 247  Q
    |||||||| | |||||||||| |||| |||||||||||| | ||| |||||| ||||||||||| ||||| ||||| |||||||||  ||||||||||||    
T  33305666 acaaattgttggaagacacatatgaaatttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgacccaagtggtccttg 33305567  T
Q  248 tagcatttctattactctattcatagatggtctatctaatggatttgtttgaatgcaccatagactaaccatagtaatctttcttaccgcatcattttct 347  Q
     ||||||||||| ||| || |||| |||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||| ||  ||||||||||    
T  33305566 aagcatttctatcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttct 33305467  T
Q  348 tcctttgagattactaaacaatctacattgttattatttagctcgagatccttataaattcaatcaggaaagaacatttcagaagtacatgaccctccaa 447  Q
    || | |||| || |  ||||||    |  ||||||| ||||||| |||||||||||||| ||||| | |||| ||||||| || ||||||||||||||      
T  33305466 tcttctgagtttgcagaacaat---taaggttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccg 33305370  T
Q  448 tgtcattattctttcttcc 466  Q
    |||||| ||||||||||||    
T  33305369 tgtcataattctttcttcc 33305351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 240 - 467
Target Start/End: Original strand, 31594857 - 31595084
Alignment:
Q  240 ggtccttgtagcatttctattactctattcatagatggtctatctaatggatttgtttgaatgcaccatagactaaccatagtaatctttcttaccgcat 339  Q
    ||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||  ||    
T  31594857 ggtccttgtagcatttcaattactttattcattggtggtctatctaatggatttgtttgaatgcaccataggctcaccatagtaatctttttaaccatat 31594956  T
Q  340 cattttcttcctttgagattactaaacaatctacattgttattatttagctcgagatccttataaattcaatcaggaaagaacatttcagaagtacatga 439  Q
    |||||||||||| ||| |||   ||| ||| || |   | ||||  | |||| |||||||||||||| || || |||||| |||||||||||||||| ||    
T  31594957 cattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtctggaaagtacatttcagaagtacacga 31595056  T
Q  440 ccctccaatgtcattattctttcttcct 467  Q
    ||||||| | | ||  ||||||||||||    
T  31595057 ccctccagtttgatagttctttcttcct 31595084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 198 - 445
Target Start/End: Original strand, 31618028 - 31618275
Alignment:
Q  198 gaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatggtctatctaatggatttgttt 297  Q
    |||||||||| ||||||||||||||| |  || ||   |||||||||||| | ||||||||||||| ||||||| | |||||||||| |||| || ||||    
T  31618028 gaatataagacaggctttggaggatatgataccgatgaaagtggtccttgcaacatttctattactttattcatcggtggtctatctgatggtttagttt 31618127  T
Q  298 gaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttcctttgagattactaaacaatctacattgttattatttagctcgagatc 397  Q
    |||||||||||||||| |||| |||||||||||| | |  ||||||||||||||  ||||||  | |||||| || |    ||||   | |||| |||||    
T  31618128 gaatgcaccatagactcaccaaagtaatctttctgatcatatcattttcttcctccgagattgttgaacaatttaaaagagtattcccttgctcaagatc 31618227  T
Q  398 cttataaattcaatcaggaaagaacatttcagaagtacatgaccctcc 445  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  31618228 cttataaatccaatctggaaagtacatttcagaagtacatgaccctcc 31618275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 198 - 467
Target Start/End: Original strand, 31614299 - 31614568
Alignment:
Q  198 gaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatggtctatctaatggatttgttt 297  Q
    |||| |||||| || ||||||||||| | ||| ||   |||||||||||| | ||||||||||||| ||||||| | |||||| |||||||| || ||||    
T  31614299 gaatgtaagaagggatttggaggatatgacaccgatgaaagtggtccttgcaacatttctattactttattcatcggtggtctgtctaatggtttagttt 31614398  T
Q  298 gaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttcctttgagattactaaacaatctacattgttattatttagctcgagatc 397  Q
    |||||||||| | ||| |||| ||| |||||||| | |  |||||||||||||| |||||||   ||||||| || |    | |||||| |||| ||||     
T  31614399 gaatgcaccaaacactcaccaaagtgatctttctaatcatatcattttcttcctctgagattgtcaaacaatttaaaagagtgttattttgctcaagatt 31614498  T
Q  398 cttataaattcaatcaggaaagaacatttcagaagtacatgaccctccaatgtcattattctttcttcct 467  Q
    ||||||||| ||||| |||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||    
T  31614499 cttataaatccaatctggaaagtacatttcagaagtgcatgaccctccagtgtcatagttctttcttcct 31614568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 195 - 349
Target Start/End: Complemental strand, 31439490 - 31439336
Alignment:
Q  195 ggagaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatggtctatctaatggatttg 294  Q
    |||||| ||||||  |||||||||||||| || | ||| |||||||||||||||||||||||||||||| || |||| |||||||| ||| |||||||||    
T  31439490 ggagaaaataagacgggctttggaggatacggtattgaatgaagtggtccttgtagcatttctattactttactcattgatggtctctctgatggatttg 31439391  T
Q  295 tttgaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttc 349  Q
    ||||||||||||||| ||| ||||||||||||||  ||||   ||||||||||||    
T  31439390 tttgaatgcaccataaactcaccatagtaatcttctttacgatatcattttcttc 31439336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 195 - 451
Target Start/End: Original strand, 31608012 - 31608271
Alignment:
Q  195 ggagaatataagaaaggctttggaggataaggcactgactga-agtggtccttgtagcatttctattactctattcatagatggtctatctaatggattt 293  Q
    |||||| ||||||  |||||||||||||| | |||||| ||| || |||||||| | ||||||||||||| ||||||| | |||||||||| |||||||     
T  31608012 ggagaaaataagaccggctttggaggatatgacactga-tgacagcggtccttgcaacatttctattactttattcattggtggtctatctgatggattc 31608110  T
Q  294 gtttgaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttcctttgagattactaaacaatct---acattgttattatttagct 390  Q
    |||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||| ||||||||   || | || |   ||| | |  |||  | |||    
T  31608111 gtttgaatgcaccatagactcaccatagtaatctttctaaccatatcattttcttccgttgagattgtcaacccatttaaaacagtatggttaccttgct 31608210  T
Q  391 cgagatccttataaattcaatcaggaaagaacatttcagaagtacatgaccctccaatgtc 451  Q
    | |||||||||||||| || || |||||| |||||||||||||||||||||| ||| ||||    
T  31608211 caagatccttataaatccagtctggaaagtacatttcagaagtacatgacccgccagtgtc 31608271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 196 - 445
Target Start/End: Original strand, 31585163 - 31585415
Alignment:
Q  196 gagaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatggtctatctaatggatttgt 295  Q
    ||||| ||||||  |||||||||||||| ||||||||   |||||||||||| | ||||||||||||| ||||||| | |||||| ||  ||||||| ||    
T  31585163 gagaaaataagacgggctttggaggatatggcactgatgaaagtggtccttgcaacatttctattactttattcatcggtggtctgtccgatggattcgt 31585262  T
Q  296 ttgaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttcctttgagattactaaacaatctaca--ttgtt-attatttagctcg 392  Q
    |||||||||||||||||| ||||||||||||||||| |||   ||||||||||| |  ||||||   ||||||| || |    ||| ||||  | ||||     
T  31585263 ttgaatgcaccatagacttaccatagtaatctttctaaccatgtcattttcttcttcggagattgtcaaacaatttaaaagaggttcattaccttgctca 31585362  T
Q  393 agatccttataaattcaatcaggaaagaacatttcagaagtacatgaccctcc 445  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||| |||||    
T  31585363 agatccttataaatccaatctggaaagtacatttcagaagcacatgaacctcc 31585415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 194 - 351
Target Start/End: Original strand, 31575751 - 31575908
Alignment:
Q  194 aggagaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatggtctatctaatggattt 293  Q
    ||||||| |||||| ||||||||||||||| | ||| ||   |||||||||||| | ||||||||||||| ||||||| | ||| || |||||||| ||     
T  31575751 aggagaaaataagacaggctttggaggatatgacaccgaggaaagtggtccttgcaacatttctattactttattcatcggtggcctgtctaatggtttg 31575850  T
Q  294 gtttgaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttcct 351  Q
    |||||||| ||||||||||| |||| |||||||||||| |||  ||||||||||||||    
T  31575851 gtttgaatacaccatagactcaccaaagtaatctttctaaccatatcattttcttcct 31575908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 236 - 451
Target Start/End: Original strand, 31604462 - 31604677
Alignment:
Q  236 aagtggtccttgtagcatttctattactctattcatagatggtctatctaatggatttgtttgaatgcaccatagactaaccatagtaatctttcttacc 335  Q
    |||||||||||| | ||||||||||||| ||||||| | |||||||||| || | || |||||||||| ||| ||||| |||| |||||||||||| |||    
T  31604462 aagtggtccttgcaacatttctattactttattcatcggtggtctatctgatagtttagtttgaatgcgccacagactcaccaaagtaatctttctgacc 31604561  T
Q  336 gcatcattttcttcctttgagattactaaacaatctacattgttattatttagctcgagatccttataaattcaatcaggaaagaacatttcagaagtac 435  Q
      ||||||||||||||  |||| |    |||||| || |    |||||  | |||| |||||||||||||| ||||| |||||| |||||||||||||||    
T  31604562 atatcattttcttcctccgagactgtcgaacaatttaaaagagtattaccttgctcaagatccttataaatccaatctggaaagtacatttcagaagtac 31604661  T
Q  436 atgaccctccaatgtc 451  Q
    ||||||| ||| ||||    
T  31604662 atgacccgccagtgtc 31604677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 31532641 - 31532681
Alignment:
Q  464 tccttgatgcaagtattctagtcctcgagcaatgccaattg 504  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  31532641 tccttgatgcaagtattctagtccttgagcaatgccgattg 31532681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 496
Target Start/End: Original strand, 31541298 - 31541330
Alignment:
Q  464 tccttgatgcaagtattctagtcctcgagcaat 496  Q
    |||||||||||||||||||||||||||||||||    
T  31541298 tccttgatgcaagtattctagtcctcgagcaat 31541330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 467
Target Start/End: Original strand, 31575948 - 31576027
Alignment:
Q  388 gctcgagatccttataaattcaatcaggaaagaacatttcagaagtacatgaccctccaatgtcattattctttcttcct 467  Q
    |||| |||||||||||||| ||||| |||||  ||||||| | |||||| ||||||||| ||||||  ||||| ||||||    
T  31575948 gctcaagatccttataaatccaatctggaaaatacatttccggagtacacgaccctccagtgtcatagttcttccttcct 31576027  T

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Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 10378646 - 10378551
Alignment:
Q  7 atgaacaattttgaagttcaacggatatgtaaagttgtactaaattaccaacaatatacaatcacattttcgcttttgcattgctaagctttttcg 102  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378646 atgaacaattttgaagttcaacggatatgtaaagttgtactatattaccaacaatatacaatcacattttcgcttttgcattgctaagctttttcg 10378551  T

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Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 210 - 467
Target Start/End: Complemental strand, 52174769 - 52174512
Alignment:
Q  210 ggctttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatggtctatctaatggatttgtttgaatgcaccata 309  Q
    |||||||||||||| ||||||||   |||||| ||||  | ||||||||||||| |||||||   |||||||||  |||| || ||||||||||||||||    
T  52174769 ggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccata 52174670  T
Q  310 gactaaccatagtaatctttcttaccgcatcattttcttcctttgagattactaaacaatctacattgttattatttagctcgagatccttataaattca 409  Q
    |||| |||| |||||||||| | |||  |||||||||||||| |||||||   ||||||| |  |    ||||   | |||| |||||||||||||| ||    
T  52174669 gactcaccaaagtaatctttataaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatcca 52174570  T
Q  410 atcaggaaagaacatttcagaagtacatgaccctccaatgtcattattctttcttcct 467  Q
     || |||||| ||||||| |||||||||||||||||| ||||||  ||||||||||||    
T  52174569 gtctggaaagtacatttctgaagtacatgaccctccagtgtcatagttctttcttcct 52174512  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 52174263 - 52174223
Alignment:
Q  464 tccttgatgcaagtattctagtcctcgagcaatgccaattg 504  Q
    ||||||||||||||| |||||||||  ||||||||||||||    
T  52174263 tccttgatgcaagtactctagtcctttagcaatgccaattg 52174223  T

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Target: scaffold0394 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 359
Target Start/End: Original strand, 1697 - 1861
Alignment:
Q  195 ggagaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatggtctatctaatggatttg 294  Q
    |||||| |||||| |||||||||||||||  | | ||| |||||||| ||||| ||||||||||||||| || |||| ||||| |||||| ||||||| |    
T  1697 ggagaaaataagataggctttggaggatattgtattgaatgaagtggcccttgcagcatttctattactttactcattgatggactatctgatggattcg 1796  T
Q  295 tttgaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttcctttgagatt 359  Q
    ||||||| ||||| | ||  ||||||||||||||  ||| |  |||||||||||| | |||||||    
T  1797 tttgaatacaccacaaacccaccatagtaatcttctttagcatatcattttcttcttctgagatt 1861  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 359
Target Start/End: Complemental strand, 15063837 - 15063673
Alignment:
Q  195 ggagaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatggtctatctaatggatttg 294  Q
    |||||| |||||| |||||||||||||||  | | ||| |||||||| ||||| ||||||||||||||| || |||| |||||||| ||| ||||||| |    
T  15063837 ggagaaaataagataggctttggaggatattgtattgaatgaagtggcccttgcagcatttctattactttactcattgatggtctgtctgatggattcg 15063738  T
Q  295 tttgaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttcctttgagatt 359  Q
    ||||||| ||||| | |   ||||||||||||||  ||| |  |||||||||||| | |||||||    
T  15063737 tttgaatacaccacaaagccaccatagtaatcttctttagcatatcattttcttcttctgagatt 15063673  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 157 - 355
Target Start/End: Original strand, 29083594 - 29083790
Alignment:
Q  157 tagaagacacatgtgaagtttgtaatgatgacatttgaggagaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttc 256  Q
    ||||| |||||| |||| ||||||| ||||| |||| |  |||||||||||||  |||| || |||| | |||||||  |||| ||||||||| | ||||    
T  29083594 tagaaaacacatatgaactttgtaacgatgatatttcataagaatataagaaaaactttagaagatatgccactgacataagtcgtccttgtaacttttc 29083693  T
Q  257 tattactctattcatagatggtctatctaatggatttgtttgaatgcaccatagactaaccatagtaatctttcttaccgcatcattttcttcctttga 355  Q
    ||||| |    |||| |||||||||||| ||| | | ||||||||| || ||||||| | ||| ||||||| ||| |||  ||||||||||||||||||    
T  29083694 tattatttc--tcattgatggtctatctcatgaaatcgtttgaatgtacgatagactcatcattgtaatctatctcaccatatcattttcttcctttga 29083790  T

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Target: scaffold0254 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 1751 - 1833
Alignment:
Q  195 ggagaatataagaaaggctttggaggataaggcactgactgaagtggtccttgtagcatttctattactctattcatagatgg 277  Q
    |||||| |||||| |||||||||||||||  | | ||| |||||||| ||||| ||||||||||||||| || |||| |||||    
T  1751 ggagaaaataagataggctttggaggatattgtattgaatgaagtggcccttgcagcatttctattactttactcattgatgg 1833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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