View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0415eco8 (Length: 432)
Name: NF0415eco8
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0415eco8 |
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| [»] scaffold0154 (2 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 428
Target Start/End: Complemental strand, 24244 - 23825
Alignment:
| Q |
9 |
agaaaacaggggaaaaacagagttttgaatgcagaggaaccccactttttatgtcacccgaatcagtaaacaatggcgagcatgaatctccggcggatat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24244 |
agaaaacaggggaaaaacagagttttgaatgcagaggaaccccgctttttatgtcgccggaatcagtaaacaatggcgagcatgaatctccggcggatat |
24145 |
T |
|
| Q |
109 |
ttgggcacttgggtgtgcagtggtggagatggtaacgggaaaaccagcatggaatttggagaaagattcaaatatgtggtcgttgttgcttcggattggt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24144 |
ttgggcacttgggtgtgcagtggtggagatggtaactggaaaaccagcttggaatttggagaaagattcaaatatgtggtcgttgttgcttcagattggt |
24045 |
T |
|
| Q |
209 |
gccggagaagaatcgccgttgatacccgaagaattaccgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaagagatggacgg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24044 |
gccggagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatcgaagaaagagatggacgg |
23945 |
T |
|
| Q |
309 |
ctgagatgcttttgaatcatccttttgttgaagaagtgaagaatgttgatgagtcgtcaccaagaaatcactttgatttcaatgattgggtttctagtga |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23944 |
ctgagatgcttttgaatcatccttttgttgaagaagtgaagaatgttgatgagtcgtcaccaagaaatcactttgatttcaatgattgggtttctagtgt |
23845 |
T |
|
| Q |
409 |
gactgattcggttccgaatt |
428 |
Q |
| |
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|| |||||| | |||||||| |
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| T |
23844 |
gaatgattctgctccgaatt |
23825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 402
Target Start/End: Complemental strand, 14824 - 14431
Alignment:
| Q |
9 |
agaaaacaggggaaaaacagagttttgaatgcagaggaaccccactttttatgtcacccgaatcagtaaacaatggcgagcatgaatctccggcggatat |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |
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| T |
14824 |
agaaaacaggggaaaaacagagttttgaatgcagaggaaccccgctttttatgtcgccggaatcagtaaacaatggcgagcatgaatctcccgcggatat |
14725 |
T |
|
| Q |
109 |
ttgggcacttgggtgtgcagtggtggagatggtaacgggaaaaccagcatggaatttggagaaagattcaaatatgtggtcgttgttgcttcggattggt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14724 |
ttgggcacttgggtgtgcagtggtggagatggtaactggaaaaccagcttggaatttggagaaagattcaaatatgtggtcgttgttgcttcagattggt |
14625 |
T |
|
| Q |
209 |
gccggagaagaatcgccgttgatacccgaagaattaccgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaagagatggacgg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
14624 |
gccggagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaaaagatggacgg |
14525 |
T |
|
| Q |
309 |
ctgagatgcttttgaatcatccttttgttgaagaagtgaagaatgttgatgagtcgtcaccaagaaatcactttgatttcaatgattgggtttc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14524 |
ctgagatgcttttgaatcatccttttgttgaagaagtgattaatgttaatgaatcgtcgccaagaaatcactttgatttcaatgattgggtttc |
14431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 428
Target Start/End: Original strand, 512 - 931
Alignment:
| Q |
9 |
agaaaacaggggaaaaacagagttttgaatgcagaggaaccccactttttatgtcacccgaatcagtaaacaatggcgagcatgaatctccggcggatat |
108 |
Q |
| |
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|||||||||||| |||||||||||| ||||||| ||||| |||||||||||||| || |||||||||||| | || ||||||||||||||||||||||| |
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| T |
512 |
agaaaacagggggaaaacagagtttgaaatgcaggggaactccactttttatgtcgccggaatcagtaaaccacggtgagcatgaatctccggcggatat |
611 |
T |
|
| Q |
109 |
ttgggcacttgggtgtgcagtggtggagatggtaacgggaaaaccagcatggaatttggagaaagattcaaatatgtggtcgttgttgcttcggattggt |
208 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
612 |
atgggcacttgggtgtgcggtggtggagatggtaactggaaaaccagcatggaatttggagaaagattcaaatatgtggtcattgttgcttcggattggt |
711 |
T |
|
| Q |
209 |
gccggagaagaatcgccgttgatacccgaagaattaccgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaagagatggacgg |
308 |
Q |
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||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
712 |
accggagaagaatcgccggtgatacccgaagaattgtcaaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaaaagatggacgg |
811 |
T |
|
| Q |
309 |
ctgagatgcttttgaatcatccttttgttgaagaagtgaagaatgttgatgagtcgtcaccaagaaatcactttgatttcaatgattgggtttctagtga |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
812 |
ctgagatgcttttgaatcatccttttgttgaagaagtgaagaatgttaatgaatcatcaccaagaaatcactttgatttcaatgattgggtttctagtgc |
911 |
T |
|
| Q |
409 |
gactgattcggttccgaatt |
428 |
Q |
| |
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|||||||||||||||||||| |
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| T |
912 |
gactgattcggttccgaatt |
931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 324
Target Start/End: Complemental strand, 6221917 - 6221768
Alignment:
| Q |
175 |
ttcaaatatgtggtcgttgttgcttcggattggtgccggagaagaatcgccgttgatacccgaagaattaccgaaagaaggaaaagattttgttgagaag |
274 |
Q |
| |
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||||||||||||||||||||| |||| ||||| || | ||| ||||| |||||||| || || |||||| | ||| |||||||||||| | || ||| |
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| T |
6221917 |
ttcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcacaagtcggaaaagattttctcgaaaag |
6221818 |
T |
|
| Q |
275 |
tgttttgttaaagatccaagaaagagatggacggctgagatgcttttgaa |
324 |
Q |
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||||| | || ||||| ||| ||||||||||| |||||||||||||| |
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|
| T |
6221817 |
tgtttcatcaaggatccttcaaaaagatggacggcagagatgcttttgaa |
6221768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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