View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0415eco9 (Length: 448)

Name: NF0415eco9
Description: NF0415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0415eco9
NF0415eco9
[»] chr8 (8 HSPs)
chr8 (12-445)||(31560559-31560992)
chr8 (8-150)||(31557730-31557870)
chr8 (8-151)||(9837957-9838108)
chr8 (207-291)||(9838278-9838362)
chr8 (366-442)||(31558936-31559012)
chr8 (361-428)||(31555903-31555969)
chr8 (174-217)||(31558017-31558060)
chr8 (140-172)||(9838124-9838156)


Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Original strand, 31560559 - 31560992
Alignment:
Q  12 gcagttttaaatatcaaccattgatttgagattgaatgactcagattacacattcattcaatttattgtaattgatctcaatcgttgatttagacggaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31560559 gcagttttaaatatcaaccattgatttgagattgaatgactcagattacacattcattcaatttattataattgatctcaatcgttgatttagacggaca 31560658  T
Q  112 ttcgagataagttaccgcagctattctgattccatactttacatagacaataacttgccttgctgaaaattctagagaaaagctttctgaggcagtgagg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31560659 ttcgagataagttaccgcagctattctgattccatactttacatagacaataacttgccttgctgaaaattctagagaaaagctttctgaggcagtgagg 31560758  T
Q  212 ctcactgtcttacagacttgcatccagttataaagagctgtctcaatgatgatgttattttataagaacaatctcaaggaagggcctaaataaaagtact 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  31560759 ctcactgtcttacagacttgcatccagttataaagagctgtctcaatgatgatgctattttataagaacaatctcaaggaagtgcctaaataaaagtact 31560858  T
Q  312 ataaagtatttacgaataatataaagtactatagaaggagaaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatata 411  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31560859 ataaagtatttacgaatagtataaagtactatagaaggagtaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatata 31560958  T
Q  412 tttttaggacacatttttcaacttatgtcaattg 445  Q
    ||||||||||||||||||||||||||||||||||    
T  31560959 tttttaggacacatttttcaacttatgtcaattg 31560992  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 31557730 - 31557870
Alignment:
Q  8 cgtcgcagttttaaatatcaaccattgatttgagattgaatgactcagattacacattcattcaatttattgtaattgatctcaatcgttgatttagacg 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||||| ||||||||| | ||||||||||||    
T  31557730 cgtcgcagttttaaatatcaaccattgattttagattgaatgactcagattaca--ttcatttaatttattgtaactgatctcaaccattgatttagacg 31557827  T
Q  108 gacattcgagataagttaccgcagctattctgattccatactt 150  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  31557828 gacattcgagatcagttacagcagctattctgattccatactt 31557870  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 9837957 - 9838108
Alignment:
Q  8 cgtcgcagttttaaatatcaaccattgatttgagattgaatgactcagattacacattcattcaatttattgtaattgatctcaatcgt--tgatttaga 105  Q
    |||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||| |||||||||| | ||||||| | | |  |||||||||    
T  9837957 cgtcgcagttttaaatctcaaccattgatttgagattgaaccgctcagattacacattcatttaatttattgttactgatctcgaccattgtgatttaga 9838056  T
Q  106 -cggacattcgagataag-----ttaccgcagctattctgattccatacttt 151  Q
     ||| |||||||||| ||     |||||||||||||||||||||||||||||    
T  9838057 tcgggcattcgagatcagttaccttaccgcagctattctgattccatacttt 9838108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 9838278 - 9838362
Alignment:
Q  207 tgaggctcactgtcttacagacttgcatccagttataaagagctgtctcaatgatgatgttattttataagaacaatctcaagga 291  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||||||    
T  9838278 tgaggctcactgtcttacacacttgcatccagttataaagagctgtctcaatgatgatgctactttacacgaacaatctcaagga 9838362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 31558936 - 31559012
Alignment:
Q  366 gaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaa 442  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||    
T  31558936 gaataatatagaagtaggttgtatcattgttcaagctacatatatatttttaggactcatttttcattttatgtcaa 31559012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 428
Target Start/End: Original strand, 31555903 - 31555969
Alignment:
Q  361 aacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttt 428  Q
    |||||||||||||||||| | ||||| ||||||||||||| |||||||||| |||||| |||||||||    
T  31555903 aacaagaataatatagaagtaggttggatcattgttcaagctacatatata-ttttagaacacatttt 31555969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 31558017 - 31558060
Alignment:
Q  174 ctgaaaattctagagaaaagctttctgaggcagtgaggctcact 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  31558017 ctgaatattctagagaaaagctttctgaggcagtgaggctcact 31558060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 9838124 - 9838156
Alignment:
Q  140 attccatactttacatagacaataacttgcctt 172  Q
    ||||||||||||||||||||| |||||||||||    
T  9838124 attccatactttacatagacagtaacttgcctt 9838156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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