View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0416-Insertion-1 (Length: 827)
Name: NF0416-Insertion-1
Description: NF0416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0416-Insertion-1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 413 - 827
Target Start/End: Complemental strand, 31525556 - 31525142
Alignment:
| Q |
413 |
atttaccattcaagtgtttaaccacatctaacttctccaccacacatacggagtgatatatggacccataacatacatattacactcgttcttatatttg |
512 |
Q |
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| T |
31525556 |
atttaacattcaagtgtttaaccacatctaacttctccaccacacatacggagtgatatatggacccataatatacttattacactcgttcttatatttg |
31525457 |
T |
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| Q |
513 |
ttattttttcttattattagacctatgacatcactgattttttctgtcttttatatcatccccatcagtatccatgttttttgaaacacaaacaaaatct |
612 |
Q |
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| T |
31525456 |
ttattttttcttattattagacccatgacatcactgattttttctgtcttttatatcatccccatcagtatccatgttttttgaaacacaaacaaaatct |
31525357 |
T |
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| Q |
613 |
tgtttgtttattattttggccacatgagacaatgcattataagacgaaccaccctgtaacaaagctttctctgcactaaccctaacctctttcactcttt |
712 |
Q |
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| T |
31525356 |
tgtttgtttattattttggccacatgagacaatgcgttataagacgaaccaccctgtaacaaagctttctctgcactaaccctaacctctttcactcttt |
31525257 |
T |
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| Q |
713 |
ccctcacgtggtttctcttcccattttggtccaccaaaattacttttctcaccaaacttgctatatcttccctatccaccacattcttccccggcgacac |
812 |
Q |
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| T |
31525256 |
ccctcacgtggtttctcttcccattttggtccaccaaaattacctttctcaccaaacttgctatctcttccctctccaccacattcttccccggcgacac |
31525157 |
T |
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| Q |
813 |
cacagtcctcaccgc |
827 |
Q |
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| T |
31525156 |
cacagtcctcaccgc |
31525142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 31526009 - 31525593
Alignment:
| Q |
8 |
aattcttcaccaaaaacatgcattaatcctagagtatatcgaactaatccacatgtttggatcctctacaaatgttatatggtgtggtacttgtaaggac |
107 |
Q |
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| T |
31526009 |
aattcttcaccaaaaacatgcattaaccctagagtatatcgaactaatccacatgtttgaatcctctacaaatgttatatgatgttgtacttgtaagaac |
31525910 |
T |
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| Q |
108 |
cgttaaatttagacagtggaatttaaagttatttctttctctaaacctaacaattcatataactacaacatcataatgtattttgctgatccaaatcctt |
207 |
Q |
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| T |
31525909 |
cattaaatttagagaatgggattcaaagttatttctttctctaaacctaacgattcatataactacaacatcataatgtattttgcttatccaaatcctt |
31525810 |
T |
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| Q |
208 |
aatctatagagacaatatgcnnnnnnnnttcttggtgataattaggtctagagataattcaaatatgataataaaagtagagtgacaattgagttcaatt |
307 |
Q |
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| T |
31525809 |
aatctacagagacaatatgcaatattttttcgtggtgataattaggtctagagataattcaaatatgataataaaagtagagtgacaattgagttcaatt |
31525710 |
T |
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| Q |
308 |
attcattatt----aatcattcaactatagatctttccaccaacactaccnnnnnnngaggccctaagccatatatattagctgtggcaaaattatgaga |
403 |
Q |
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| T |
31525709 |
attcattattaatcaatcattcaactatagatctttccaacaacactaccaaaaaaagaggcccttagccatatatattagctgtggcaaaattatgaga |
31525610 |
T |
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| Q |
404 |
gagactaccatttacca |
420 |
Q |
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| T |
31525609 |
gagactaccatttacca |
31525593 |
T |
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