View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0416-Insertion-2 (Length: 562)

Name: NF0416-Insertion-2
Description: NF0416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0416-Insertion-2
NF0416-Insertion-2
[»] chr4 (2 HSPs)
chr4 (8-555)||(33088205-33088753)
chr4 (247-290)||(29263831-29263874)
[»] chr5 (2 HSPs)
chr5 (363-411)||(12538875-12538923)
chr5 (254-290)||(8353792-8353828)
[»] chr1 (1 HSPs)
chr1 (368-431)||(39596409-39596472)
[»] chr7 (1 HSPs)
chr7 (376-425)||(6524620-6524669)
[»] chr3 (1 HSPs)
chr3 (368-409)||(40714291-40714332)
[»] chr6 (1 HSPs)
chr6 (248-284)||(7745026-7745062)


Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Complemental strand, 33088753 - 33088205
Alignment:
Q  8 caattacccccaccacaacacccacatactcaccacgaagctggttccatccattgctgccatctttctctcttcacagtgccttcccttgtcacttatg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33088753 caattacccccaccacaacacccacatactcaccacgaagctggttccatccattgctgccatctttctctcttaacagtgccttcccttgtcacttatg 33088654  T
Q  108 catctaattagctggctttaggtgtatgatgtagcccataagtcttgttacttttttgtgtagtttgtccttgaatgtgtcaac-agtcttaatatagtg 206  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33088653 catctaattagctggctttgggtgtatgatgtagcccataagtcttgttacttttttgtgtagtttgtccttgaatgtgtcaaccagtcttaatatagtg 33088554  T
Q  207 attgaatgttttaaaattacagaaatagtcttgatgtttcgaatgtgtcttttattagttagtttggtcatcaaatatatctttggtaagcaatttagtc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33088553 attgaatgttttaaaattacagaaatagtcttgatgtttcgaatgtgtcttttattagttagtttggtcatcaaatatatctttggtaggcaatttagtc 33088454  T
Q  307 cacaaaataactaacatagagatgtatttgcaattttaatacattcaaatactataatagttcaactcatttgagttaagggattaaaagagttcatgag 406  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33088453 cacaaaataactaacatagatatgtatttgcaatttcaatacattcaaatactataatagttcaactcatttgagttaagggattaaaagagttcaggag 33088354  T
Q  407 ttaaaggtccagagttcaaatcttgacaaacacaagtgatcattttaaaacatcttccctcccttcccctcttctccattaaaatttgtcccctcaatta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33088353 ttaaaggtccagagttcaaatcttgacaaacacaagtgatcattttaaaacatcttccctcccttcccctcttctccattaaaatttgtcccctcaatta 33088254  T
Q  507 aaatgtctctccttccttcatgtgcaaaatgacaatttagtctattttt 555  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  33088253 aaatgtctctccttccttcatttgcaaaatgacaatttagtctactttt 33088205  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 29263874 - 29263831
Alignment:
Q  247 gaatgtgtcttttattagttagtttggtcatcaaatatatcttt 290  Q
    ||||||||||||| |||||||||||||||||| ||||| |||||    
T  29263874 gaatgtgtcttttgttagttagtttggtcatcgaatatctcttt 29263831  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 12538875 - 12538923
Alignment:
Q  363 atagttcaactcatttgagttaagggattaaaagagttcatgagttaaa 411  Q
    ||||||||||| ||||||| ||||||||| |||||||| ||||||||||    
T  12538875 atagttcaactgatttgagctaagggattgaaagagttgatgagttaaa 12538923  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 8353828 - 8353792
Alignment:
Q  254 tcttttattagttagtttggtcatcaaatatatcttt 290  Q
    |||||||||||||||||||||| |||||| |||||||    
T  8353828 tcttttattagttagtttggtcctcaaatgtatcttt 8353792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 431
Target Start/End: Complemental strand, 39596472 - 39596409
Alignment:
Q  368 tcaactcatttgagttaagggattaaaagagttcatgagttaaaggtccagagttcaaatcttg 431  Q
    |||||| |||||||||||||||||||| ||||| ||| || ||||||| || |||||| |||||    
T  39596472 tcaactgatttgagttaagggattaaaggagttgatgtgtcaaaggtctagggttcaagtcttg 39596409  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Original strand, 6524620 - 6524669
Alignment:
Q  376 tttgagttaagggattaaaagagttcatgagttaaaggtccagagttcaa 425  Q
    ||||||||||||||||||| ||||| | ||||||||||| ||| ||||||    
T  6524620 tttgagttaagggattaaaggagttgaggagttaaaggttcagggttcaa 6524669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 40714332 - 40714291
Alignment:
Q  368 tcaactcatttgagttaagggattaaaagagttcatgagtta 409  Q
    |||||| || ||||||||||||||||||||||| ||||||||    
T  40714332 tcaactgatatgagttaagggattaaaagagttgatgagtta 40714291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 7745062 - 7745026
Alignment:
Q  248 aatgtgtcttttattagttagtttggtcatcaaatat 284  Q
    |||||||||||| |||| |||||||||||||||||||    
T  7745062 aatgtgtcttttgttagatagtttggtcatcaaatat 7745026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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