View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0416-Insertion-3 (Length: 463)
Name: NF0416-Insertion-3
Description: NF0416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0416-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Original strand, 47406683 - 47407140
Alignment:
| Q |
7 |
aatagattcattaaagccaattaatcgattattatgacagaatataggcaaaatgtacaaaagttgaaggtttcggttacttaatctagtattgaattac |
106 |
Q |
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| T |
47406683 |
aatagattcattaaagccaattaatcgattattatgacagaatataggcaaaatgtacaaaagttgaaggtttcggttacttaatccagtattgaattac |
47406782 |
T |
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| Q |
107 |
taaaaatacaaaattaaggttcgttacattctacctctcttaaaataattc-atcctcgaaattcaattgaagactggacaaataaacagctgaatttca |
205 |
Q |
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| T |
47406783 |
taaaaatacaaaattaaggttcgttacattctacctctcttaaaataattccatcctcgaaattcaattgaacactggacaaataaacagctgaatttca |
47406882 |
T |
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| Q |
206 |
atttgaattagaaatgaagtttacgaatcattaagaattggattcagttttggcataaatggaaatatgacttgcattactaactcaagttcaggcataa |
305 |
Q |
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| T |
47406883 |
atttgaattagaaatgaagtttacgaatcattaagaattggattcagttttggcacaaatggaaatatgactgatattactaactcaagttcaggcataa |
47406982 |
T |
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| Q |
306 |
aggtaacttggggtttacaatggagcaccccagtcggaaaccaaaataacaacacgtccatgaaataaagcaaaacatcaaaacagtatgagcttgggcc |
405 |
Q |
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| T |
47406983 |
aggtaacttggggtttacaagggagcaccccagtcggaaaccaaaataacaacacgtccatgaaataaagcaaaacatcaaaacagtatgagcttgggcc |
47407082 |
T |
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| Q |
406 |
ctaatctaactgtctgctccgtggactcataaccgacacgcttggattctgtatgaca |
463 |
Q |
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| T |
47407083 |
ctaatctaactgtctgctccgtggactcataaccgacacgcttggattctgtatgaca |
47407140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 47417498 - 47417608
Alignment:
| Q |
108 |
aaaaatacaaaattaaggttcgttacattctacctctcttaaaataatt-catcctcgaaattcaattgaagac---tggacaaataaacagctgaattt |
203 |
Q |
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||||| ||||||||| || ||||||||| ||| ||||||||| |||| | |||| |||||||||||||||| ||||| |||||||||| |||||| |
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| T |
47417498 |
aaaaagacaaaattatgggccgttacattttactcctcttaaaacaatttcgtcctagaaattcaattgaagatcattggacgaataaacagcagaattt |
47417597 |
T |
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| Q |
204 |
caatttgaatt |
214 |
Q |
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| T |
47417598 |
caatttgaatt |
47417608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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