View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0416-Insertion-4 (Length: 356)
Name: NF0416-Insertion-4
Description: NF0416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0416-Insertion-4 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 4142393 - 4142044
Alignment:
| Q |
7 |
acttacgcaaattttaaccaatattaaaagagtgttggaagcaaatttagaaagaatctctattactaataataagtttatcattgttttgtttcaatta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142393 |
acttacgcaaattttaaccaatattaaaagagtgttggaagcaaatttagaaagaatctctattactaataataagtttatcattgttttgtttcaatta |
4142294 |
T |
|
| Q |
107 |
ctaggcatggaagctatggttagaagaaaacattatatctctaatagatccagaggtttgggatgcatcttttgagagtagcatgttgaggtgcatacac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4142293 |
ctaggcatggaagctatggttagaagaaaacattatatctctaatagatccagaggtttgggatgcatcttttgagagtagcatgttaaggtgcatacac |
4142194 |
T |
|
| Q |
207 |
ataggacttctttgtgtgcaagaacttccaaaagaaagaccaagtatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctcctg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142193 |
ataggacttctttgtgtgcaagaacttccaaaagaaagaccaagtatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctcctg |
4142094 |
T |
|
| Q |
307 |
gtaaagttgcatttgttcacaagcaaaattctcgaagtacagaatcttct |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142093 |
gtaaagttgcatttgttcacaagcaaaattctcgaagtacagaatcttct |
4142044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 356
Target Start/End: Complemental strand, 4130037 - 4129692
Alignment:
| Q |
12 |
cgcaaattttaaccaatattaaaa-gagtgttggaagcaaatttagaaagaatctc--tattactaataataagtttatcattgttttgtttcaattact |
108 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||||| || |||||| |||||| |||||||||||| || || |
|
|
| T |
4130037 |
cgcaaattttaaccaataataaaaagagtgtttgaggcaaatttagaaagaatctcaatattattagtaataactttatctttgttttgtttc--tttct |
4129940 |
T |
|
| Q |
109 |
aggcatggaagctatggttagaagaaaacattatatctctaatagatccagaggtttgggatgcatcttttgagagtagcatgttgaggtgcatacacat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |||||||||| |||||| ||||||||||| ||||| || ||||||||||||||||| ||||| |
|
|
| T |
4129939 |
aggcatggaagctatggttagaagaaaatactatatccctaatagatcgagaggtatgggatgcatcctttgaaagcagcatgttgaggtgcatgcacat |
4129840 |
T |
|
| Q |
209 |
aggacttctttgtgtgcaagaacttccaaaagaaagaccaagtatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctcctggt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
4129839 |
aggacttctttgtgtgcaagaacttccaaaagaaagaccaagtatatcaactgttgttttgatgctcataagtgagattacacatcttccacctcccggt |
4129740 |
T |
|
| Q |
309 |
aaagttgcatttgttcacaagcaaaattctcgaagtacagaatcttct |
356 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4129739 |
aaagttgcatttgttcacaaccaaaattctcgaagtacagaatcttct |
4129692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 104 - 337
Target Start/End: Complemental strand, 4119912 - 4119679
Alignment:
| Q |
104 |
ttactaggcatggaagctatggttagaagaaaacattatatctctaatagatccagaggtttgggatgcatcttttgagagtagcatgttgaggtgcata |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
4119912 |
ttacaaggcatggaagctatggttagaagaaaacattatatctctaatagatccagaggtatgggatgcatgttttgagagcagcatgttaaggtgcata |
4119813 |
T |
|
| Q |
204 |
cacataggacttctttgtgtgcaagaacttccaaaagaaagaccaagtatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctc |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||| |
|
|
| T |
4119812 |
cacataggacttctttgtgtgcaagaacttccaaaagaaagaccaagtatatcaaccgtagttttgatgctcataaatgagataaggcatcttccacctc |
4119713 |
T |
|
| Q |
304 |
ctggtaaagttgcatttgttcacaagcaaaattc |
337 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |
|
|
| T |
4119712 |
caggtaaagttgcatttgttcacaagcaaaattc |
4119679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 93 - 337
Target Start/End: Complemental strand, 4159446 - 4159202
Alignment:
| Q |
93 |
ttttgtttcaattactaggcatggaagctatggttagaagaaaacattatatctctaatagatccagaggtttgggatgcatcttttgagagtagcatgt |
192 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4159446 |
ttttgtttcttttactaggcatggaagctatggttagaagaaaacattatatctctaatagatcgagaggtttgggatgcatcttttgagagcagcatgt |
4159347 |
T |
|
| Q |
193 |
tgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagaccaagtatatcaaccgtagttttgatgcttataagtgagatcacaca |
292 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
4159346 |
tgaggtgcatacacataggacttctctgtgtgcaagaacttccaagagacagaccaaatatatcaacagttgttttgatgctcataagtgagattacaca |
4159247 |
T |
|
| Q |
293 |
tcttccacctcctggtaaagttgcatttgttcacaagcaaaattc |
337 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |||||| ||||||| |
|
|
| T |
4159246 |
tcttcctcctccaggaaaagttgcatttgtccacaagaaaaattc |
4159202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 104 - 333
Target Start/End: Complemental strand, 4150322 - 4150093
Alignment:
| Q |
104 |
ttactaggcatggaagctatggttagaagaaaacattatatctctaatagatccagaggtttgggatgcatcttttgagagtagcatgttgaggtgcata |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
4150322 |
ttaccaggcatggaagctatggttagaagaaaacattatatctctaatagatccagaggtatgggatgcatgttttgagagcagcatgttaaggtgcata |
4150223 |
T |
|
| Q |
204 |
cacataggacttctttgtgtgcaagaacttccaaaagaaagaccaagtatatcaaccgtagttttgatgcttataagtgagatcacacatcttccacctc |
303 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| ||| ||||||| ||||||||| || |||||||||||| ||||||| || ||||||||||| |||| |
|
|
| T |
4150222 |
cacatcggacttctttgtgtacaagaacttccaagagacagaccaaatatatcaactgttgttttgatgcttgtaagtgaaattacacatcttcctcctc |
4150123 |
T |
|
| Q |
304 |
ctggtaaagttgcatttgttcacaagcaaa |
333 |
Q |
| |
|
| || | ||||||||||||||||||||||| |
|
|
| T |
4150122 |
cggggagagttgcatttgttcacaagcaaa |
4150093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 2716621 - 2716566
Alignment:
| Q |
192 |
ttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagacc |
247 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| || |||| || ||||| |
|
|
| T |
2716621 |
ttgagatgcatacacattggacttctttgtgtgcaagaaattgcaaaggagagacc |
2716566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 2723244 - 2723189
Alignment:
| Q |
192 |
ttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagacc |
247 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| || |||| || ||||| |
|
|
| T |
2723244 |
ttgagatgcatacacattggacttctttgtgtgcaagaaattgcaaaggagagacc |
2723189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 2745075 - 2745020
Alignment:
| Q |
192 |
ttgaggtgcatacacataggacttctttgtgtgcaagaacttccaaaagaaagacc |
247 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| || |||| || ||||| |
|
|
| T |
2745075 |
ttgagatgcatacacattggacttctttgtgtgcaagaaattgcaaaggagagacc |
2745020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1402 times since January 2019
Visitors: 3229