View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0416_low_1 (Length: 324)
Name: NF0416_low_1
Description: NF0416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0416_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 110 - 312
Target Start/End: Complemental strand, 39986553 - 39986349
Alignment:
| Q |
110 |
gtactgcatctggacaaattatttccctcctgatttacttccttccaggtcccttctcctg--acgactataatgaatgnnnnnnnnnnnnnnnnnnnnn |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39986553 |
gtactgcatctggacaaattatttccctcctgatttacttccttccaggtcccttctcctgggacgactataatgaatgaaaaacaaaacaaaaaaacaa |
39986454 |
T |
|
| Q |
208 |
nnnngccttctcatggttatctatttccctttaataattaattaaatttatacagacatgacgacacacttatccaagggggccatcctacctcaccttt |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
39986453 |
aaaagccttctcatggttatctatttccctttaataattaattaaatttatacagacatgacgacacacttatccaagggggccatccgacctcaccttt |
39986354 |
T |
|
| Q |
308 |
agtat |
312 |
Q |
| |
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||||| |
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| T |
39986353 |
agtat |
39986349 |
T |
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