View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0416_low_4 (Length: 243)

Name: NF0416_low_4
Description: NF0416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0416_low_4
NF0416_low_4
[»] chr5 (4 HSPs)
chr5 (13-131)||(17431076-17431193)
chr5 (13-131)||(41612264-41612381)
chr5 (136-214)||(40045274-40045354)
chr5 (31-77)||(4421409-4421454)
[»] chr7 (3 HSPs)
chr7 (13-131)||(35552847-35552964)
chr7 (13-131)||(19914249-19914366)
chr7 (14-71)||(39474540-39474596)
[»] chr2 (6 HSPs)
chr2 (13-131)||(40109914-40110031)
chr2 (13-131)||(19469346-19469463)
chr2 (13-128)||(11580002-11580116)
chr2 (13-131)||(18845092-18845209)
chr2 (13-105)||(12562586-12562677)
chr2 (30-71)||(7300259-7300299)
[»] chr4 (8 HSPs)
chr4 (136-243)||(45991105-45991214)
chr4 (13-101)||(55479804-55479892)
chr4 (13-70)||(9321795-9321851)
chr4 (13-70)||(9376274-9376330)
chr4 (14-71)||(34104903-34104959)
chr4 (13-81)||(12225795-12225862)
chr4 (13-53)||(32384873-32384913)
chr4 (13-93)||(19119641-19119720)
[»] chr6 (2 HSPs)
chr6 (13-128)||(25349787-25349901)
chr6 (19-128)||(26513294-26513402)
[»] chr3 (4 HSPs)
chr3 (13-131)||(53940882-53941000)
chr3 (13-119)||(34294249-34294354)
chr3 (13-93)||(34434315-34434394)
chr3 (30-93)||(31770164-31770226)
[»] chr8 (5 HSPs)
chr8 (13-131)||(25192653-25192770)
chr8 (13-123)||(25879079-25879188)
chr8 (13-116)||(31639971-31640074)
chr8 (13-130)||(39432187-39432303)
chr8 (13-119)||(42579916-42580021)
[»] chr1 (2 HSPs)
chr1 (13-112)||(52691101-52691199)
chr1 (13-119)||(44762096-44762201)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 17431076 - 17431193
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  17431076 aatatttacaaaattacggtcagtcgatacccaaacataacataggg-tccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctcta 17431174  T
Q  113 accaccataaaaaatggaa 131  Q
    ||||||||||| |||||||    
T  17431175 accaccataaagaatggaa 17431193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 41612264 - 41612381
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| | ||||||||||| ||||||||||||||||    
T  41612264 aatatttacaaaattacggtcagtcgatacccagacataacataggg-tccgaccaccacatttgagtgccgtgcacaaacaaggcattattagcctgta 41612362  T
Q  113 accaccataaaaaatggaa 131  Q
    ||||||||||| |||||||    
T  41612363 accaccataaagaatggaa 41612381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 40045274 - 40045354
Alignment:
Q  136 ttgaatctgcaaaatttattagccaagaacgtggaagaaccaccaaaacttggaacac--agagagaaaatacaaaggtgt 214  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| |||||| ||||||||    
T  40045274 ttgaatcggcaaaatttattagccaagaaggtggaagaaccaccaaaacttggaacacaaagagataaaatagaaaggtgt 40045354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 4421409 - 4421454
Alignment:
Q  31 gtcagtcgatacccaaacataacataggggtccgaccaccacatctg 77  Q
    |||||||||||||||||||||||| |||| | |||||||||||||||    
T  4421409 gtcagtcgatacccaaacataaca-agggattcgaccaccacatctg 4421454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 35552847 - 35552964
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  35552847 aatatttacaaaattacagtcagtcgatacccagacataacataggg-tccgaccaccacatctgagtgccatgcacaaacaaggcattattagcctgta 35552945  T
Q  113 accaccataaaaaatggaa 131  Q
    ||||||||||| |||||||    
T  35552946 accaccataaagaatggaa 35552964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 19914249 - 19914366
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||||||| |||||||||||| ||  ||||||||| |  ||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  19914249 aatatttacaaaattacagtcagtcgatactcagtcataacataaga-tccgaccaccacatctgagtgtcatgcacaaacaaggcattattaacctgta 19914347  T
Q  113 accaccataaaaaatggaa 131  Q
    ||||||||||| |||||||    
T  19914348 accaccataaagaatggaa 19914366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 39474596 - 39474540
Alignment:
Q  14 atatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccacca 71  Q
    |||| ||||||| ||||||||||| |||||||| ||||||| | ||||||||||||||    
T  39474596 atatgtacaaaaatacggtcagtcaatacccaagcataaca-aagggtccgaccacca 39474540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 40109914 - 40110031
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  40109914 aatatttataaaattacggtcagtcgatacccagacataacataggg-tccgaccaccacatctaagtgtcatgcacaaacaaggcattattagcctgta 40110012  T
Q  113 accaccataaaaaatggaa 131  Q
    ||||||||||| |||||||    
T  40110013 accaccataaagaatggaa 40110031  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 19469463 - 19469346
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||| |||||||||||||||| || ||||||||||||  |||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  19469463 aatatttacaaaagtacggtcagtcgatactcagacataacatagga-tccgaccaccacatgtgagtgtcatgcacaaacaaggcattattagcttgta 19469365  T
Q  113 accaccataaaaaatggaa 131  Q
     ||| |||||| |||||||    
T  19469364 gccatcataaagaatggaa 19469346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 11580116 - 11580002
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||| | | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| | || |||||||||| ||    
T  11580116 aatatttacaaaagttcagtcagtcgatacccaaacataacatagggttc-gaccaccacatctgagtgtcatgcacaaacgaggcgttattagccttta 11580018  T
Q  113 accaccataaaaaatg 128  Q
     |||||| ||| ||||    
T  11580017 gccaccacaaagaatg 11580002  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 18845209 - 18845092
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||| |||||||| |||||||||||  ||||||||||||| |||||||||| ||| |    
T  18845209 aatatttacaaaagtacggtcagtcgatacctagacataacataggg-tccgaccatcacatctgagtaccatgcacaaacaaggcattattagtctgca 18845111  T
Q  113 accaccataaaaaatggaa 131  Q
     | |||||||| |||||||    
T  18845110 gctaccataaagaatggaa 18845092  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 12562586 - 12562677
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattatta 105  Q
    |||||||||| || || |||||||||||||||| | |||||||| || ||| |||||||||||| ||| ||||||| |||| | |||||||||    
T  12562586 aatatttacacaactatggtcagtcgatacccagatataacata-ggatccaaccaccacatctcagtctcatgcaaaaaccaggcattatta 12562677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 7300259 - 7300299
Alignment:
Q  30 ggtcagtcgatacccaaacataacataggggtccgaccacca 71  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  7300259 ggtcagtcgatacccaaacataaca-aagggtccgaccacca 7300299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 45991105 - 45991214
Alignment:
Q  136 ttgaatctgcaaaatttattagccaagaacgtggaagaaccaccaaaacttggaacac--agagagaaaatacaaaggtgtcgaatacaacgtgcaccaa 233  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  45991105 ttgaatcggcaaaatttattagccaagaaggtggaagaaccaccaaaacttggaacacaaagagagaaaatacaaaggtgtcgaatacaacgtgcaccaa 45991204  T
Q  234 tgttataata 243  Q
    ||| ||||||    
T  45991205 tgtcataata 45991214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 55479804 - 55479892
Alignment:
Q  13 aatatttacaaaa-ttacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcatt 101  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  55479804 aatatttacaaaaattacggtcagtcgatacccagacataacataggg-tccgaccaccacaactgagtgtcatgcacaaacaaggcatt 55479892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 9321851 - 9321795
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccacc 70  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||    
T  9321851 aatatttacaaaagtacggtcagtcgatactcaaacataacata-gggtccgaccacc 9321795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 9376330 - 9376274
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccacc 70  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||    
T  9376330 aatatttacaaaagtacggtcagtcgatactcaaacataacata-gggtccgaccacc 9376274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 34104903 - 34104959
Alignment:
Q  14 atatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccacca 71  Q
    |||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||    
T  34104903 atatgtacaaaaatacggtcagtcgatacccaaacataaca-aagggtccgaccacca 34104959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 12225862 - 12225795
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtg 81  Q
    |||||||||||||| | |||||||||||||||| | | || ||| ||||||||||||||||||| ||||    
T  12225862 aatatttacaaaataaaggtcagtcgatacccagataaaatata-gggtccgaccaccacatctaagtg 12225795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 32384913 - 32384873
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataac 53  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  32384913 aatatttacaaaattacagtcagtcgatacccagacataac 32384873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 19119641 - 19119720
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaac 93  Q
    ||||||||| |||  |||||||||||||||||| |||||||| |  |||| ||||||||  ||| |||||| |||||||||    
T  19119641 aatatttactaaacaacggtcagtcgatacccagacataaca-aaaggtctgaccaccaactctaagtgtcgtgcacaaac 19119720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 25349787 - 25349901
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  25349787 aatatttacaaaattatggtcagtcgatacccagacataacataggg-tccgaccaccacatctgagtgccatgcacaaacaaggcattattagcatgta 25349885  T
Q  113 accaccataaaaaatg 128  Q
    ||||||||||| ||||    
T  25349886 accaccataaagaatg 25349901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 26513294 - 26513402
Alignment:
Q  19 tacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgtaaccacc 118  Q
    ||||||| ||||||||||||||||||| | ||||||| ||| ||||||||||||||||| ||| | |||| |||| | ||||||||||||| ||||||||    
T  26513294 tacaaaagtacggtcagtcgatacccagaaataacattggg-tccgaccaccacatctgtgtgccgtgcataaacgaggcattattagcctttaaccacc 26513392  T
Q  119 ataaaaaatg 128  Q
    | ||| ||||    
T  26513393 acaaagaatg 26513402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 53940882 - 53941000
Alignment:
Q  13 aatatttacaaaa-ttacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgt 111  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  53940882 aatatttacaaaaattacggtcagtcgatacccagacataacataggg-tccgaccaccacaactgagtgccatgcacaaacaaggcattattagcctgt 53940980  T
Q  112 aaccaccataaaaaatggaa 131  Q
    |||||||||||| |||||||    
T  53940981 aaccaccataaagaatggaa 53941000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 34294354 - 34294249
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    |||||||||| || | | |||||||||||||||||||||| |||||| || |||||||| ||||||||| ||||||||||||| ||||||||||||| ||    
T  34294354 aatatttacacaagttcagtcagtcgatacccaaacataagatagggttc-gaccaccatatctgagtgccatgcacaaacaaggcattattagccttta 34294256  T
Q  113 accacca 119  Q
    |||||||    
T  34294255 accacca 34294249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 34434394 - 34434315
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaac 93  Q
    ||||||||||||| ||| |||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||    
T  34434394 aatatttacaaaactacagtcagtcgatacccaaacataaca-aagggttcgaccaccacatctgagtgtcgtgcacaaac 34434315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 31770226 - 31770164
Alignment:
Q  30 ggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaac 93  Q
    |||||||||| ||||||||| ||||||||| |||||||||||  |||||||||||| |||||||    
T  31770226 ggtcagtcgaaacccaaacacaacataggg-tccgaccaccatctctgagtgtcatacacaaac 31770164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 25192653 - 25192770
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  25192653 aatatttacaaaagtacggtcagtcgatacccagacataacataggg-tacgaccaccacatctgagtgccatgcacaaacaaggcattattagcttgta 25192751  T
Q  113 accaccataaaaaatggaa 131  Q
     |||||||||| |||||||    
T  25192752 gccaccataaataatggaa 25192770  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 25879079 - 25879188
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||  |||||||||| ||  |||||||||||||||    
T  25879079 aatatttacaaaattacggttagtcgatacccatacataacataggg-tccgaccaccacatctgagtaccatgcacaaagaagacattattagcctgta 25879177  T
Q  113 accaccataaa 123  Q
    |||||||||||    
T  25879178 accaccataaa 25879188  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 31640074 - 31639971
Alignment:
Q  13 aatatttacaaaa-ttacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgt 111  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  31640074 aatatttacaaaaattacggtcagtcgatacccagacataacataggg-tccgaccaccacaactgagtgtcatgcacaaacaaggcattattaacctgt 31639976  T
Q  112 aacca 116  Q
    |||||    
T  31639975 aacca 31639971  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 39432187 - 39432303
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||| || ||| ||||||||||||| ||||||||||||||  |||||||||| ||||    
T  39432187 aatatttacaaaagtatggtcagtcgatacccagacataacataggg-tctgacgaccacatctgagtatcatgcacaaacaagacattattagcttgta 39432285  T
Q  113 accaccataaaaaatgga 130  Q
     |||||||||| ||||||    
T  39432286 gccaccataaagaatgga 39432303  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 42580021 - 42579916
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    |||||||| |||| ||| |||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||| ||    
T  42580021 aatatttataaaagtacagtcaatcgatatccaaacataacatagggttc-gaccaccacatctgagtgtcatgcacaaacgaggcattattagccttta 42579923  T
Q  113 accacca 119  Q
     ||||||    
T  42579922 gccacca 42579916  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 52691101 - 52691199
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  52691101 aatatttacaaaattacggtcagtcgatacccagacataacata-gggtccgaccaccacatctgagtgtcatgcacaaacaagacattattagcttgta 52691199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 44762096 - 44762201
Alignment:
Q  13 aatatttacaaaattacggtcagtcgatacccaaacataacataggggtccgaccaccacatctgagtgtcatgcacaaacaaagcattattagcctgta 112  Q
    |||||||||| || | | ||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||||||||| ||||||||||||| ||    
T  44762096 aatatttacacaagttcagtcagtcgatacccaaacataacatagggttc-gaccagcacatctgagtgccatgcacaaacaatgcattattagccttta 44762194  T
Q  113 accacca 119  Q
    |||||||    
T  44762195 accacca 44762201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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