View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0417-Insertion-1 (Length: 780)

Name: NF0417-Insertion-1
Description: NF0417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0417-Insertion-1
NF0417-Insertion-1
[»] chr7 (10 HSPs)
chr7 (100-780)||(4233926-4234606)
chr7 (100-512)||(4210530-4210942)
chr7 (110-684)||(4251038-4251609)
chr7 (227-777)||(4189294-4189847)
chr7 (242-657)||(4192537-4192952)
chr7 (509-733)||(4196230-4196454)
chr7 (104-674)||(4246613-4247180)
chr7 (105-156)||(4189921-4189972)
chr7 (739-778)||(4246524-4246563)
chr7 (111-145)||(4193052-4193086)
[»] chr5 (1 HSPs)
chr5 (8-55)||(38816928-38816975)


Alignment Details
Target: chr7 (Bit Score: 649; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 100 - 780
Target Start/End: Complemental strand, 4234606 - 4233926
Alignment:
Q  100 ctttgttggtcttccccaaccaaaatcaatctcataaacaccaaatctattagacccggcaactcccatcatttcaagtttttcacttgctaaagaagcg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4234606 ctttgttggtcttccccaaccaaaatcaatctcataaacaccaaatctattagacccggcaactcccatcatttcaagtttttcacttgctaaagaagcg 4234507  T
Q  200 aatttatcaaacatatcactaactccatcaagaacacccttttcatttatcatctttattttttcatgaatacacttagcaactaaaaacaccccatctt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4234506 aatttatcaaacatatcactaactccatcaagaacacccttttcatttatcatctttattttttcatgaatacacttagcaactaaaaacaccccatctt 4234407  T
Q  300 cgtttatgtaatccaatggttttgtatcaactaaatgtccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4234406 cgtttatgtaatccaatggttttgtatcaactaaatgtccccatacgcagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatc 4234307  T
Q  400 tacggtgaatgcaaacccaaacttccctttctcattttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagat 499  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4234306 tacggtgaatgcaaacccaaacttctctttctccttttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagat 4234207  T
Q  500 gataaagttggtggcttagaatttaattcattcgtgtccaataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagct 599  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4234206 gataaagttggtggcttagaagttaattcattcgtgtccaataattcccattttgataataccatttgctttatcttattcaaatcttcacgtgtgagct 4234107  T
Q  600 tgaatgtagaacgaacatagtcttcgagttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaacatcatggttattat 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4234106 tgaatgtagaacgaacatagtcttcgagttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaacatcatggttattat 4234007  T
Q  700 ctccctccagttttttgtgaacttatcaccaagtccgttgtctttgatgatttccctgtcgaatagaggttttaactctgg 780  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  4234006 ctccgtccagttttttgtgaacttatcaccaagtccattgtctttgatgatttccctgtctaatagaggttttaactctgg 4233926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 100 - 512
Target Start/End: Complemental strand, 4210942 - 4210530
Alignment:
Q  100 ctttgttggtcttccccaaccaaaatcaatctcataaacaccaaatctattagacccggcaactcccatcatttcaagtttttcacttgctaaagaagcg 199  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| || ||||||| |  |||| |||  ||| ||  |    
T  4210942 ctttgttggtcttccccacccaaaatcaatctcataaacaccaaatctattagatcccgccactcctattatttcaaatccttcagttgacaaataattg 4210843  T
Q  200 aatttatcaaacatatcactaactccatcaagaacacccttttcatttatcatctttattttttcatgaatacacttagcaactaaaaacaccccatctt 299  Q
    ||||||  ||||  ||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4210842 aatttactaaacccatcactagctccttcaagaccacccttttcatttatcatctttattttctcatgaatacacttagcaactaaaaacaccccatctt 4210743  T
Q  300 cgtttatgtaatccaatggttttgtatcaactaaatgtccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatc 399  Q
    | |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4210742 catttatgtaatccgatggttttgtatcaaccaaatgtccccatacacaatttccaaaatagttatttggtagtgatggctctaaccttgctctgcaatc 4210643  T
Q  400 tacggtgaatgcaaacccaaacttccctttctcattttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagat 499  Q
    |||||||||| ||||  |||||||| |||||||  ||| || |||||||||||||||||||||||||||||| |  |||| ||| ||||||||||| |||    
T  4210642 tacggtgaatccaaatgcaaacttctctttctccattttaattccatgaattgcttttgccaaacaaacaagggcataagaacatgtgagaacaaacgat 4210543  T
Q  500 gataaagttggtg 512  Q
    |||||||| ||||    
T  4210542 gataaagtgggtg 4210530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 110 - 684
Target Start/End: Complemental strand, 4251609 - 4251038
Alignment:
Q  110 cttccccaaccaaaatcaatctcataaacaccaaatctattagacccggcaactcccatcatttcaagtttttcacttgctaaagaagcgaatttatcaa 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| | ||||| |  |||||| | |||||||   | ||||| ||    
T  4251609 cttccccaaccaaaatcaatctcataaacaccaaatctatgagaccccgccactcccataaattcaaatccttcactcgataaagaaataattttattaa 4251510  T
Q  210 acatatcactaa---ctccatcaagaacacccttttcatttatcatctttattttttcatgaatacacttagcaactaaaaacaccccatcttcgtttat 306  Q
    |||||||| |||   | || ||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| || |||||||| |||||    
T  4251509 acatatcattaatctccccttcaagaaaacccttttcatttatcatctttattttctcataaatactcttagcaactaaaaaaacaccatcttcttttat 4251410  T
Q  307 gtaatccaatggttttgtatcaactaaatgtccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtg 406  Q
      ||||||| || | ||||||||  ||||   |||| ||||||||||||| |||||||||||||| || ||| |||||||||||||||||||||||| ||    
T  4251409 aaaatccaacggctgtgtatcaataaaatacgcccaaacacagtttccaagatagttatttggtattgttggttctaaccttgctctgcaatctacgctg 4251310  T
Q  407 aatgcaaacccaaacttccctttctcattttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaag 506  Q
    ||  ||||   ||||||| |||| ||||| | | | |||||||| |||||||| | |||||| ||||| |||||||||||||  ||||| ||||||| ||    
T  4251309 aacacaaaagaaaacttctctttgtcattatgagccccatgaatcgcttttgcaacacaaacgagcgaataagcacaagtgatgacaaatgatgatagag 4251210  T
Q  507 ttggtggcttagaatttaattcattcgtgtccaataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagcttgaatgt 606  Q
    || |||||      ||| |||| ||||| || |||| ||||||| | ||||| |   ||||||||||||||| |||||||||| || ||||||| || ||    
T  4251209 tttgtggc------tttgattctttcgtatcgaatatttcccatgtagataacactctttgctttatcttatccaaatcttcatgtttgagcttaaaagt 4251116  T
Q  607 agaacgaacatagtcttcgagttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaa 684  Q
    || ||||||| |||||||||||| ||||||||| || |||||||| |||||||| ||||||||||||||| |||||||    
T  4251115 agcacgaacagagtcttcgagttgtggttcaaatgggaaaatctttaagcttctatcatttcctttttcacttgggaa 4251038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 227 - 777
Target Start/End: Complemental strand, 4189847 - 4189294
Alignment:
Q  227 tcaagaacacccttttcatttatcatctttattttttcatgaatacacttagcaactaaaaacaccccatcttcgtttatgtaatccaatggttttgtat 326  Q
    ||||||||||| || |||||||||||||||||||| || | |||||||||||||||||| || || || ||||  || ||| ||||||| |||| ||||     
T  4189847 tcaagaacaccgttctcatttatcatctttattttctcgtaaatacacttagcaactaagaaaacaccgtcttttttaatgaaatccaacggttgtgtac 4189748  T
Q  327 caactaaatgtccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtgaatgcaaacccaaacttccc 426  Q
      |  || |  ||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||   ||||||  |    
T  4189747 tgatgaagttcccccaaacacagtttccaaaatagttacttggtattggtggttctaaccttgctctgcaatctacggtgaaagcaaaagaaaacttttc 4189648  T
Q  427 tttctcattttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaagttggtggcttagaatttaat 526  Q
    ||||||  | ||  |||  ||||| ||||||||  ||||||| || || ||||||||||||||||||||||||||||||||| ||||||| |||| | ||    
T  4189647 tttctccatatctgctcggtgaatcgcttttgcataacaaacgagtgaataagcacaagtgagaacaaaagatgataaagtttgtggctttgaatatgat 4189548  T
Q  527 tcattcgtgtccaataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtagaacgaacatagtcttcga 626  Q
    ||||| || ||  | ||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||| | ||||||  ||||||| |    
T  4189547 tcatttgtatcataaaattcccattttgataacaccatttgctttatcttgttcaaatcttcacgcgtgagattgaatgtggcacgaacggagtcttcaa 4189448  T
Q  627 gttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaacatcatggttattatctccctccagttttttgtgaacttatc 726  Q
    |||||||||||||  ||||||| || |||||   ||| |||||||||||  ||||||| ||| ||| ||| |||||  ||||| | ||||||||  || |    
T  4189447 gttttggttcaaagtgtaaaatatttaagctatgttcgtttcctttttcgcttgggaaaatcgtggatatgatctcggtccagctatttgtgaatgtaac 4189348  T
Q  727 accaagtccgtt---gtctttgatgatttccctgtcgaatagaggttttaactc 777  Q
    ||||||  | ||   ||||||||||| |||||| || |||| ||||| ||||||    
T  4189347 accaagctcattcgggtctttgatgacttccctatcaaataaaggttctaactc 4189294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 242 - 657
Target Start/End: Complemental strand, 4192952 - 4192537
Alignment:
Q  242 tcatttatcatctttattttttcatgaatacacttagcaactaaaaacaccccatcttcgtttatgtaatccaatggttttgtatcaactaaatgtcccc 341  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | ||  ||||||| |  ||  | | | |||||||||||||||| ||||| ||||    
T  4192952 tcatttatcatctttattttctcatgaatacacttagcaactaaataaacatcatcttcttccataaagttcgatggttttgtatcaacaaaatgccccc 4192853  T
Q  342 atacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtgaatgcaaacccaaacttccctttctcattttcaac 441  Q
    | |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| || ||| |||||   ||||||  ||||||| ||  || |    
T  4192852 agacacagtttccaaaatagttatttggtattggtggttctaaccttgatctgcaatctatggggaaagcaaaagaaaacttatctttctccttagcagc 4192753  T
Q  442 tccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaagttggtggcttagaatttaattcattcgtgtccaat 541  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |||||||| | |||||||  ||||| |||||||  | || |      
T  4192752 tccatgaatcgcttttgccaaacaaacaagcgaatatgcacaagtgagaacaaaagctgataaagattgtggctttaaatttgattcatttttatcaaca 4192653  T
Q  542 aattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtagaacgaacatagtcttcgagttttggttcaaaag 641  Q
    | |||| |||||||| ||| |||||||||||||||  ||||||||||| | ||||| ||||| || | ||||||  |||||| |||||||||||||||      
T  4192652 acttccaattttgatgataccatttgctttatcttgatcaaatcttcaagcgtgagattgaacgtggcacgaactgagtctttgagttttggttcaaagt 4192553  T
Q  642 gtaaaatcttcaagct 657  Q
    ||||||| || |||||    
T  4192552 gtaaaatatttaagct 4192537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 509 - 733
Target Start/End: Complemental strand, 4196454 - 4196230
Alignment:
Q  509 ggtggcttagaatttaattcattcgtgtccaataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtag 608  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  4196454 ggtggcttagaatttaattcatttgtgtccaataattcccattttgttaacaccatttgctttatcttgttcaaatcttcacgtgtgagcttgaacgtag 4196355  T
Q  609 aacgaacatagtcttcgagttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaacatcatggttattatctccctcca 708  Q
     ||||| | |||||||||| ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||  ||||||| | ||| |||||    
T  4196354 cacgaagagagtcttcgaggtttggttcaaaagctaaaatcttcaagcatctttcgtttcctttttcatttgggaacatgttggttatgaactctctcca 4196255  T
Q  709 gttttttgtgaacttatcaccaagt 733  Q
     || |||||||||||||||||||||    
T  4196254 attatttgtgaacttatcaccaagt 4196230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 104 - 674
Target Start/End: Complemental strand, 4247180 - 4246613
Alignment:
Q  104 gttggtcttccccaaccaaaatcaatctcataaacaccaaatctattagacccggcaactcccatcatttcaagtttttcacttgctaaagaagcgaatt 203  Q
    |||||| |||||||||||| |||||| ||||| |||||||||||||||||||| |||||||| |  ||||||| |  ||| ||||  ||| ||     ||    
T  4247180 gttggttttccccaaccaagatcaatgtcatacacaccaaatctattagaccctgcaactccaaatatttcaaatccttctcttgtcaaacaactatgtt 4247081  T
Q  204 tatcaaaca---tatcactaactccatcaagaacacccttttcatttatcatctttattttttcatgaatacacttagcaactaaaaacaccccatcttc 300  Q
    ||| | |||    |||| || |  | ||||||| ||||||||||||||||||||||||||| |||| |||||  |||||||||||| | || ||||||||    
T  4247080 tattatacacatcatcaatagcctcttcaagaaaacccttttcatttatcatctttattttctcataaatacttttagcaactaaagaaacaccatcttc 4246981  T
Q  301 gtttatgtaatccaatggttttgtatcaactaaatgtccccatacacagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatct 400  Q
     |||||  |||| || |||| || |||||  ||||| ||||| | ||||||||||| ||||||||||| || |||||| | ||||||||  || ||||||    
T  4246980 ttttataaaatctaacggttgtgcatcaatgaaatgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatct 4246881  T
Q  401 acggtgaatgcaaacccaaacttccctttctcattttcaactccatgaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatg 500  Q
    || |  ||  |||| ||||||||| |||| | ||||| |||| | || |||||||| || | |||||| ||||| |||||||||| ||| ||||| ||||    
T  4246880 acagcaaacacaaaaccaaacttctctttataattttgaacttcgtggattgctttcgcaagacaaactagcgaataagcacaagcgaggacaaacgatg 4246781  T
Q  501 ataaagttggtggcttagaatttaattcattcgtgtccaataattcccattttgataatatcatttgctttatcttattcaaatcttcacgtgtgagctt 600  Q
    ||| | || |||||      ||| ||||  | || || |||  ||||||| ||||||| | | ||||||||||||||| |||||||||  || |||| |     
T  4246780 atatattttgtggc------tttgattctcttgtatcgaatgtttcccatgttgataacaccctttgctttatcttatccaaatcttcgtgtttgagttc 4246687  T
Q  601 gaatgtagaacgaacatagtcttcgagttttggttcaaaaggtaaaatcttcaagcttctttcatttccttttt 674  Q
     || ||||  |||||| |||||| |||||||||||||||| | ||| |||| |||||||||||||||| |||||    
T  4246686 aaaagtagcgcgaacacagtctttgagttttggttcaaaatggaaattctttaagcttctttcatttctttttt 4246613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 4189972 - 4189921
Alignment:
Q  105 ttggtcttccccaaccaaaatcaatctcataaacaccaaatctattagaccc 156  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  4189972 ttggccttccccaaccaaaatcagtctcataaacaccaaatctattagaccc 4189921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 778
Target Start/End: Complemental strand, 4246563 - 4246524
Alignment:
Q  739 gtctttgatgatttccctgtcgaatagaggttttaactct 778  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  4246563 gtctttgatgatttccctgttgaatataggttttaactct 4246524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 4193086 - 4193052
Alignment:
Q  111 ttccccaaccaaaatcaatctcataaacaccaaat 145  Q
    ||||||||||||||||| |||||||||||||||||    
T  4193086 ttccccaaccaaaatcagtctcataaacaccaaat 4193052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 38816928 - 38816975
Alignment:
Q  8 tgttgaagatcaaccaatagttttgggtcatcttctttcaccaacaaa 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816928 tgttgaagatcaaccaatagttttgggtcatcttctttcaccaacaaa 38816975  T

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