View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0417-Insertion-2 (Length: 611)

Name: NF0417-Insertion-2
Description: NF0417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0417-Insertion-2
NF0417-Insertion-2
[»] chr4 (2 HSPs)
chr4 (95-611)||(27765386-27765902)
chr4 (94-602)||(56404787-56405276)
[»] chr8 (2 HSPs)
chr8 (95-554)||(4548691-4549152)
chr8 (375-598)||(24651194-24651417)
[»] scaffold0002 (1 HSPs)
scaffold0002 (95-611)||(209132-209648)
[»] chr5 (5 HSPs)
chr5 (141-336)||(41505140-41505335)
chr5 (95-372)||(19275770-19276042)
chr5 (458-537)||(10618254-10618333)
chr5 (8-55)||(38816928-38816975)
chr5 (467-518)||(30980927-30980978)
[»] chr6 (4 HSPs)
chr6 (326-584)||(11112645-11112905)
chr6 (96-231)||(33669505-33669640)
chr6 (95-240)||(33677815-33677957)
chr6 (95-137)||(29264782-29264824)
[»] scaffold0016 (1 HSPs)
scaffold0016 (100-246)||(105273-105418)
[»] chr2 (1 HSPs)
chr2 (398-464)||(24861240-24861306)


Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 95 - 611
Target Start/End: Original strand, 27765386 - 27765902
Alignment:
Q  95 ttggaaaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27765386 ttggaaaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtat 27765485  T
Q  195 ttgcgccatcaccatcttcaaataacgtattttctacggtagcaccatgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatatg 294  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27765486 ttgcgccatcaccatcttcaaataacgtattttctaaggtagcaccttgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatatg 27765585  T
Q  295 aaatgggtttaatgtccaattatgaaacccttggaaaaatagaatgaatcgaaatatagctgctacaccaaaactaggcgcaaagaaccaaccagactga 394  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27765586 aaatgggtttaatgtccaattatgaaacccttgaaaaaatagaatgaatcgaaatatagctgctacaccaaaactaggcgcaaagaaccaaccagactga 27765685  T
Q  395 cccagtggataaatcaggaatacagaaacaaaaacagcaattggaccggagaatgcgattgcattataagggcgcaattgaacagatcgagcaagttcaa 494  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  27765686 cccagtggataaatcaggaatacagaaacaaaaacaacaattggaccggagaatgtgattgcattataagggcacaattgaacagatcgagcaagttcaa 27765785  T
Q  495 attgacgtaacataaaacctattaatccgaaagcaccgtggagagcaacaaaagtccacagaccacccaattgacaccaacgggtaaaatctccctgtgc 594  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27765786 attgacgtaacataaaacctattaatctgaaagcaccatggagagcaacaaaagtccacaaaccactcaattgacaccaacgggtaaaatctccctgtgc 27765885  T
Q  595 ttcaggaccccatagta 611  Q
    |||||||||||||||||    
T  27765886 ttcaggaccccatagta 27765902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 94 - 602
Target Start/End: Complemental strand, 56405276 - 56404787
Alignment:
Q  94 gttggaaaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgta 193  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||| ||| |||||||||||||| ||||||| |||| |||| |    
T  56405276 gttggaaaaagcaaccccaaatatttggtaccaaaagtggttagcggtgaccgttgaataaatttattccgcttgagttgagttaaaatcacgaaatgaa 56405177  T
Q  194 tttgcgccatcaccatcttcaaataacgtattttctacggtagcaccatgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatat 293  Q
    |||||| |||||| |||||||||||| |||||| ||| ||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| |||| |||    
T  56405176 tttgcgtcatcacaatcttcaaataatgtatttcctatggtagaaccatgaatagcgcatagta-ggcagtgcccagtacaccagcaactctcatcgtat 56405078  T
Q  294 gaaatgggtttaatgtccaattatgaaacccttggaaaaatagaatgaatcgaaatatagctgctacaccaaaactaggcgcaaagaaccaaccagactg 393  Q
    ||||||  ||||||||||||||||||||||||| |||||| | |||||||||||||||| |||||||||||||| ||||                  | |    
T  56405077 gaaatgattttaatgtccaattatgaaacccttagaaaaagataatgaatcgaaatataactgctacaccaaaattagg------------------ccg 56404996  T
Q  394 acccagtggataaatcaggaatacagaaacaaaaacagcaattggaccggagaatgcgattgcattataagggcgcaattgaacagatcgagcaagttca 493  Q
    ||| ||||||||||||| ||||||| ||||||||||| |||||  ||| ||||||||||||| ||| |||||  ||||||||||| ||| ||||||||||    
T  56404995 acctagtggataaatcatgaatacataaacaaaaacatcaattaaaccagagaatgcgattggattttaaggaagcaattgaacaaatcaagcaagttca 56404896  T
Q  494 aattgacgtaacataaaacctattaatccgaaagcaccgtggagagcaacaaaagtccacagaccacccaattgacaccaacgggtaaaatctccctgtg 593  Q
    |||||| |||| ||||||||||||||||  |||||||| ||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||  |||    
T  56404895 aattgatgtaatataaaacctattaatcataaagcaccatggagagcaacaagagtccacaaaccacctaattgacaccaactggtaaaatctccacgtg 56404796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 95 - 554
Target Start/End: Original strand, 4548691 - 4549152
Alignment:
Q  95 ttggaaaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4548691 ttggaaaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtat 4548790  T
Q  195 ttgcgccatcaccatcttcaaataacgtattttctacggtagcaccatgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatatg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4548791 ttgcgccatcaccatcttcaaataacgtattttctacggtagcaccatgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatatg 4548890  T
Q  295 aaatgggtttaatgtccaattatgaaacccttggaaaaatagaatgaatcgaaatatagctgctacaccaaaactaggcgcaaagaaccaaccagactga 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4548891 aaatgggtttaatgtccaattatgaaacccttggaaaaatagaatgaatcgaaatatagctgctacaccaaaactaggcgcaaagaaccaaccagactga 4548990  T
Q  395 cccagtggataaatcaggaatacagaaacaaaaa--cagcaattggaccggagaatgcgattgcattataagggcgcaattgaacagatcgagcaagttc 492  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4548991 cccagtggataaatcaggaatacagaaacaaaaaacaagcaattggaccggagaatgcgattgcattataagggcgcaattgaacagatcgagcaagttc 4549090  T
Q  493 aaattgacgtaacataaaacctattaatccgaaagcaccgtggagagcaacaaaagtccaca 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4549091 aaattgacgtaacataaaacctattaatccgaaagcaccgtggagagcaacaaaagtccaca 4549152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 375 - 598
Target Start/End: Complemental strand, 24651417 - 24651194
Alignment:
Q  375 caaagaaccaaccagactgacccagtggataaatcaggaatacagaaacaaaaacagcaattggaccggagaatgcgattgcattataagggcgcaattg 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24651417 caaagaaccaaccagactgacccagtggataaatcaggaatacagaaacaaaaacaacaattggaccggagaatgcgattgcattataagggcgcaattg 24651318  T
Q  475 aacagatcgagcaagttcaaattgacgtaacataaaacctattaatccgaaagcaccgtggagagcaacaaaagtccacagaccacccaattgacaccaa 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24651317 aacagatcgagcaagttcaaattgacgtaacataaaacctattaatccgaaagcaccgtggagagcaaaaaaagtccacagaccacccaattgacaccaa 24651218  T
Q  575 cgggtaaaatctccctgtgcttca 598  Q
    |||||||||||||||| |||||||    
T  24651217 cgggtaaaatctccctatgcttca 24651194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 95 - 611
Target Start/End: Complemental strand, 209648 - 209132
Alignment:
Q  95 ttggaaaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtat 194  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  209648 ttggaaaaagcaacaccaaagatttgggaccaaaagcggttagcagtgaccattgaataagtttcttcagcttgagttgggttaaaagcacggaatgtat 209549  T
Q  195 ttgcgccatcaccatcttcaaataacgtattttctacggtagcaccatgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatatg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  209548 ttgcgccatcaccatcttcaaataacgtattttctacggtagcaccatgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatatg 209449  T
Q  295 aaatgggtttaatgtccaattatgaaacccttggaaaaatagaatgaatcgaaatatagctgctacaccaaaactaggcgcaaagaaccaaccagactga 394  Q
    ||||||||| || |||||||||||||| |||||||| || || |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  209448 aaatgggttcaacgtccaattatgaaatccttggaagaaaaggatgaatcgaaatatcgctgctacgccaaaactcggcgcaaagaaccaaccagactga 209349  T
Q  395 cccagtggataaatcaggaatacagaaacaaaaacagcaattggaccggagaatgcgattgcattataagggcgcaattgaacagatcgagcaagttcaa 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  209348 cccagtggataaatcaggaatacagaaacaaaaacagcaattggaccagagaatgagattgcattataaggccgcaattgaacagaccgagcaagttcaa 209249  T
Q  495 attgacgtaacataaaacctattaatccgaaagcaccgtggagagcaacaaaagtccacagaccacccaattgacaccaacgggtaaaatctccctgtgc 594  Q
    |||| |||||||| |||||||||| | | ||||| ||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||||||| |||||    
T  209248 attggcgtaacatgaaacctattagtgcaaaagccccgtggagagctacaaaagtccatagaccgcctaattgacaccaacgagtaaaatctccttgtgc 209149  T
Q  595 ttcaggaccccatagta 611  Q
    ||| || ||||||||||    
T  209148 ttctggcccccatagta 209132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 141 - 336
Target Start/End: Complemental strand, 41505335 - 41505140
Alignment:
Q  141 tgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtatttgcgccatcaccatcttcaaataacgtattttctacggtagcacc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41505335 tgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtatttgcgccatcaccatcttcaaataacgtattttctacggtagcacc 41505236  T
Q  241 atgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatatgaaatgggtttaatgtccaattatgaaacccttggaaaaatag 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41505235 atgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatatgaaatgggtttaatgtccaattatgaaacccttggaaaaatag 41505140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 95 - 372
Target Start/End: Complemental strand, 19276042 - 19275770
Alignment:
Q  95 ttggaaaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtat 194  Q
    |||||||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  19276042 ttggaaaaagcaaccccaaagatttgggaccaaaagcgg----cggtgactattgaataagttttttccgcttgagttgggttaatagcacggaatgtat 19275947  T
Q  195 ttgcgccatcaccatcttcaaataacgtattttctacggtagcaccatgaatagcgcatagtagggcagcgcccaatacaccagcaactcccatcatatg 294  Q
    ||| | |||||  |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  19275946 ttgtgtcatcattatcttcaaataacgtattttctacggtagcacgatgaatagcgcatagtagcgcaacgcccaatacaccagaaactcccatcatatg 19275847  T
Q  295 aaatgggtttaatgtccaattatgaaacccttggaaaaatagaatgaatcgaaatatagctgctacaccaaaactagg 372  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||    
T  19275846 aaatgggtttaatgtcgaattatgaaacccttgaaaaaagagaatgaatcgaaatacagctgctaca-caaaactagg 19275770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 458 - 537
Target Start/End: Complemental strand, 10618333 - 10618254
Alignment:
Q  458 ttataagggcgcaattgaacagatcgagcaagttcaaattgacgtaacataaaacctattaatccgaaagcaccgtggag 537  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| | |||||||||    
T  10618333 ttataagggggcaattgaacaaatcgagcaagttcaaattgacgtaacatagaatctattaatccgaatgtaccgtggag 10618254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 38816928 - 38816975
Alignment:
Q  8 tgttgaagatcaaccaatagttttgggtcatcttctttcaccaacaaa 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816928 tgttgaagatcaaccaatagttttgggtcatcttctttcaccaacaaa 38816975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 518
Target Start/End: Complemental strand, 30980978 - 30980927
Alignment:
Q  467 cgcaattgaacagatcgagcaagttcaaattgacgtaacataaaacctatta 518  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  30980978 cgcaattgaatagatcgaacaagttcaaattgacgtaacataaaacttatta 30980927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 326 - 584
Target Start/End: Original strand, 11112645 - 11112905
Alignment:
Q  326 tggaaaaatagaatgaatcgaaatatagctgctacaccaaaactaggcgcaaagaaccaaccagactgacccagtggataaatcaggaatacagaaacaa 425  Q
    |||||||  |||||||||| |||||||||| |||||||||||||| |||||||||||||| || ||||||  ||||||||||| ||||||||| ||||||    
T  11112645 tggaaaatgagaatgaatcaaaatatagctactacaccaaaactatgcgcaaagaaccaatcatactgacatagtggataaattaggaatacataaacaa 11112744  T
Q  426 aaacagcaattggaccgg--agaatgcgattgcattataagggcgcaattgaacagatcgagcaagttcaaattgacgtaacataaaacctattaatccg 523  Q
    ||| |||||||||| |||  | |||| |||||||||||||||||||||||||||||||||| |||||| |||||||| ||| ||||||| |||||||||     
T  11112745 aaaaagcaattggatcggacaaaatgtgattgcattataagggcgcaattgaacagatcgaacaagtttaaattgacataatataaaacgtattaatcca 11112844  T
Q  524 aaagcaccgtggagagcaac-aaaagtccacagaccacccaattgacaccaacgggtaaaat 584  Q
    |||||||||| ||||||||| ||||||  |||||||||| ||||||||||||||||||||||    
T  11112845 aaagcaccgt-gagagcaacaaaaagtgtacagaccaccgaattgacaccaacgggtaaaat 11112905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 96 - 231
Target Start/End: Original strand, 33669505 - 33669640
Alignment:
Q  96 tggaaaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtatt 195  Q
    ||||||||| ||||||| |  |||| ||||||||| |||||||||||| ||||||| |||||| |||| ||||||||||||||||||||| |||||||||    
T  33669505 tggaaaaaggaaccccagatttttgtgaccaaaagtggttagcggtgatcattgaacaagttttttccacttgagttgggttaaaagcacagaatgtatt 33669604  T
Q  196 tgcgccatcaccatcttcaaataacgtattttctac 231  Q
    ||||||| || ||||||||||||| |||||||||||    
T  33669605 tgcgccaccatcatcttcaaataatgtattttctac 33669640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 33677815 - 33677957
Alignment:
Q  95 ttggaaaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtat 194  Q
    |||||||||||||||  ||||||||  | |||||| |||||| || |||| |||||||| |||| |||  |||||||| |||||| |||| |||||||||    
T  33677815 ttggaaaaagcaaccataaagatttctggccaaaa-cggttaacgatgactattgaata-gttt-ttctacttgagttaggttaagagcatggaatgtat 33677911  T
Q  195 ttgcgccatcaccatcttcaaataacgtattttctacggtagcacc 240  Q
    ||  | ||||||||||||||||||| |||||||||| |||||||||    
T  33677912 ttatgtcatcaccatcttcaaataatgtattttctatggtagcacc 33677957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 29264782 - 29264824
Alignment:
Q  95 ttggaaaaagcaaccccaaagatttgggaccaaaagcggttag 137  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29264782 ttggaaaaagcaaccccaaagatttgggaccaaaagcggttag 29264824  T

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Target: scaffold0016 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 100 - 246
Target Start/End: Original strand, 105273 - 105418
Alignment:
Q  100 aaaagcaaccccaaagatttgggaccaaaagcggttagcggtgaccattgaataagtttcttccgcttgagttgggttaaaagcacggaatgtatttgcg 199  Q
    |||||||||| |||||||||| ||||||||||||||| |  |||| ||||||| ||||| ||| |||||||||| ||||||| ||| ||||||||||| |    
T  105273 aaaagcaaccgcaaagatttgtgaccaaaagcggttaacaatgactattgaatgagttt-ttctgcttgagttgtgttaaaaacaccgaatgtatttgtg 105371  T
Q  200 ccatcaccatcttcaaataacgtattttctacggtagcaccatgaat 246  Q
    |||||| ||||||||||||| ||||||| ||||||||| || |||||    
T  105372 ccatcaacatcttcaaataatgtattttttacggtagctccgtgaat 105418  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 398 - 464
Target Start/End: Original strand, 24861240 - 24861306
Alignment:
Q  398 agtggataaatcaggaatacagaaacaaaaacagcaattggaccggagaatgcgattgcattataag 464  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  24861240 agtggataaatcaggaatacagaaacaaaaacagcagttggaccgaagaatgcgattgcattataag 24861306  T

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