View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0417-Insertion-3 (Length: 524)
Name: NF0417-Insertion-3
Description: NF0417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0417-Insertion-3 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 100 - 524
Target Start/End: Original strand, 176261 - 176687
Alignment:
| Q |
100 |
ctttgttgagaaattgtccaaagaatggttttgatagtcaaatgcaaatataccttttccgccaaggacttcaaggtgaatccaagaacatgttggatgc |
199 |
Q |
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| T |
176261 |
ctttgttgagaaattgtccaaagaatggttttgatagtcaaatgcaaatataccttttccgccaaggacttcaaggtgaatccaagaacatgttggatgc |
176360 |
T |
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| Q |
200 |
cgcttcatctggatctttaatgttgaaaaccccttcggacgccgtaaagataattgatcaaatggcactcaacacccgaaagtcatctcacaaccgaaac |
299 |
Q |
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| T |
176361 |
cgcttcatctggatctttaatgtagaaaaccccttcggacgccgtaaagataattgatcaaatggcactcaacacccgaaagtcatctcacaaccgaaac |
176460 |
T |
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| Q |
300 |
ccgtcacaaaggaaagccggtattcttgaattggagtctagtgatgcattgttggcacaaatagaggcattgcaaaaaggaatgaaagacatgcccaagc |
399 |
Q |
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| T |
176461 |
ccttcacaaaggaaagccggtattcttgaattggagtctagtgatgcattgttggcacaaatagaggcattgcaaaaaggaatgaaagacatgcccaagc |
176560 |
T |
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| Q |
400 |
aaatcctagagcaactc-aaaaagaccaaggtaccttacaagtcaatgcttgtgagttgtgtttcggtgaccatccaaccggatgttgt-ccccaccatg |
497 |
Q |
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| T |
176561 |
aaatcctagagcaactcaaaaaagaccaaggtaccttacaagtcaatgcttgtgagttgtgtttcggtgaccatccaaccggatgttgtcccccaccatg |
176660 |
T |
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| Q |
498 |
cgaagaagaagtgaattttgtgggaaa |
524 |
Q |
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| T |
176661 |
cgaagaagaagtgaattttgtgggaaa |
176687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 252 - 360
Target Start/End: Original strand, 20170014 - 20170122
Alignment:
| Q |
252 |
attgatcaaatggcactcaacacccgaaagtcatctcacaaccgaaacccgtcacaaaggaaagccggtattcttgaattggagtctagtgatgcattgt |
351 |
Q |
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| T |
20170014 |
attgaccaaatggcactcaatgaccgcaaagcatctcacaaccgaagtccttcaaaaagggaagccggtattcttgaattggagtctagtgatgcggtgc |
20170113 |
T |
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| Q |
352 |
tggcacaaa |
360 |
Q |
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| T |
20170114 |
tggcacaaa |
20170122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 38816928 - 38816975
Alignment:
| Q |
8 |
tgttgaagatcaaccaatagttttgggtcatcttctttcaccaacaaa |
55 |
Q |
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| T |
38816928 |
tgttgaagatcaaccaatagttttgggtcatcttctttcaccaacaaa |
38816975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 524
Target Start/End: Original strand, 20170139 - 20170309
Alignment:
| Q |
356 |
acaaatagaggcattgcaaaaaggaatgaaagacatgcccaagcaaatcctagagcaactc-aaaaagaccaaggtaccttacaagtcaatgcttgtgag |
454 |
Q |
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|||||| || ||| ||||||||| | ||||| |||||||||||||||||| | ||| || ||||||| |||| | |||||| || |||||||| |
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| T |
20170139 |
acaaatggaagcaatgcaaaaagataggaaagctatgcccaagcaaatcctaaaacaattccaaaaagaaggaggtttttcacaagtaaacgcttgtgaa |
20170238 |
T |
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| Q |
455 |
ttgtgtttcggtgaccatccaaccggatgttgtcc-ccaccatgcgaagaagaagtgaattttgtgggaaa |
524 |
Q |
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| T |
20170239 |
ttgtgttccggtgaccatcccaccgggttttgtccaccaccatgcgaaggagaggtaaactttgtgggaaa |
20170309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 20167363 - 20167436
Alignment:
| Q |
100 |
ctttgttgagaaattgtccaaagaatggttttgatagtcaaatgcaaatataccttttccgccaaggacttcaa |
173 |
Q |
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| T |
20167363 |
ctttgttgaggaattgtccaaaacatggctttactaatcaaatgcaaatctacctcttccgccaagggcttcaa |
20167436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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