View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0417-Insertion-4 (Length: 450)
Name: NF0417-Insertion-4
Description: NF0417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0417-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 138 - 450
Target Start/End: Original strand, 34471326 - 34471638
Alignment:
| Q |
138 |
tttgttgtgtggtggttggtggtgtgattcgccgccgtggatggcgttgaatgtcgccggcgatggtgaggagggagttttgggttggacaagatttggt |
237 |
Q |
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| T |
34471326 |
tttgttgtgtggtggttggtggtgtgattcgccaccgtggatggcgttgaatgtcgccggcgatggtgaggagggagttttggattggacaagatttggt |
34471425 |
T |
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| Q |
238 |
tgaaaataagtcgtggttaatgcaattttttgttgagaattgtggtttgtgattgtgtgtggagaggtgtaagtgttctctacgcttaaatagaacacat |
337 |
Q |
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| T |
34471426 |
tgaaaataagtcgtggttaatgcaattttttgttgagaattgtggtttgtgattgtgtgtggagaggtgtaagtgttctctacgcttaaatagaacacat |
34471525 |
T |
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| Q |
338 |
ctaaagtaatagattctaaaccattgaaccaatcatatggtaaaatttaattacctcaccagtgatggactagaccattccctcaccttagacgtaccag |
437 |
Q |
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| T |
34471526 |
ctaaagtaatagattctaaaccattgaaccaatcatatggtaaaatttaattacctcaccagtgatggacttgaccattccctcaccttagacgtaccag |
34471625 |
T |
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| Q |
438 |
cactatcctgatt |
450 |
Q |
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| T |
34471626 |
cactatcctgatt |
34471638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 38816928 - 38816975
Alignment:
| Q |
8 |
tgttgaagatcaaccaatagttttgggtcatcttctttcaccaacaaa |
55 |
Q |
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| T |
38816928 |
tgttgaagatcaaccaatagttttgggtcatcttctttcaccaacaaa |
38816975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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