View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0418_high_10 (Length: 279)
Name: NF0418_high_10
Description: NF0418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0418_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 39315102 - 39315147
Alignment:
| Q |
138 |
tctcattgataaatgatctacttgtaatgttgatgcttcattccga |
183 |
Q |
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| T |
39315102 |
tctcattgataaatgatctacttgtaatgttgatgcttcattccga |
39315147 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 39315044 - 39315078
Alignment:
| Q |
80 |
caaaggccaacaacaaaatgtggaagggtagctac |
114 |
Q |
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| T |
39315044 |
caaaggccaacaacaaaatgtggaagggtagctac |
39315078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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