View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0418_low_1 (Length: 666)
Name: NF0418_low_1
Description: NF0418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0418_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 85 - 652
Target Start/End: Complemental strand, 43761175 - 43760630
Alignment:
| Q |
85 |
catcatcatcatgtttgggatcaaccaacttctcataaacatgttcagcatcagacaaaatacaaccatttgatactgttccactacaatccatgatcct |
184 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43761175 |
catcatcatcatctttgggatcaaccaacttctcataaacatgttcagcatcagacaaaatacaaccatttgatactgttacactacaatccatgatcct |
43761076 |
T |
|
| Q |
185 |
ctcctcacaacaaactatttcgttttgagaagaagcatcaaccaaacccatctcttgtagaaacctttcttttctttccttcacactaacaggctcatta |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43761075 |
ctcctcacaacaaactatttcgttttgagaagaagcatcaaccaaacccatctcttgtagaaacctttcttttcttaccttcacactaacaggctcatta |
43760976 |
T |
|
| Q |
285 |
agccaaaactcatacctaaggtcttgtttagtcaaaagagagtcttctttagaaggtggcaaacattccagtgagtcaaagaacacatcattatctcttt |
384 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |
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| T |
43760975 |
agccaaaactcatacctaaggtcttgtttagtcaaaagagagtcttctttagaaggtgacaaacattccaatgagtcaaagaacacatcattatctcctt |
43760876 |
T |
|
| Q |
385 |
catcagagatcatcaacatatcttgtaataatcctcctcaaacaaaaaagtcccacatgaaaagnnnnnnnnntgcaactaactaactaacaaactattt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |
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| T |
43760875 |
catcagagatcatcaacatatcttgtaataatcctcctcaaacaaaaaagtcccacatgaaaagaaaaagaaatgcaactaactagctaacaaattattt |
43760776 |
T |
|
| Q |
485 |
cactttctctactccacacaccttaaatatcaatcaaagcccctaaaatcaagggtccgagattctctcggtgattatgtgaaattcaatgtcaaaacaa |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
43760775 |
cactttctctactccacacaccttaaatatcaatcaaagcccctaaaatcaagggtccgagatt----------------------caatgtcaaaacaa |
43760698 |
T |
|
| Q |
585 |
caggcagagagagaccaagttcgaggaaccaagaaacagcttcagaaaagaaccaataacaagaggtt |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43760697 |
caggcagagagagaccaagttcgaggaaccaagaaacagcttcagaaaagaaccaataacaagaggtt |
43760630 |
T |
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