View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0418_low_12 (Length: 281)
Name: NF0418_low_12
Description: NF0418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0418_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 59 - 259
Target Start/End: Complemental strand, 11650436 - 11650236
Alignment:
| Q |
59 |
atgttcatcagagacatacagaaaattaatgagtagaaaaaccactatatctgcaaacctcagaatttgttgtgcaataattgagtgggttagttatatg |
158 |
Q |
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| T |
11650436 |
atgttcatcagagacttacagaaaattaatgagtagaaaaaccgctttatctgcaaacctgagaatttgttgtgcaataattgagtgggttagttatatg |
11650337 |
T |
|
| Q |
159 |
ctcatgaaaatgaaaatatgtgagttatgattttctgtaagatcttgtaattgtattgtatgcacggtaattgttttgtatgcactgtaccgtgagttca |
258 |
Q |
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| T |
11650336 |
atcatgaaaatgaaaatatgtgagttatgattttctgtaagaccttgtaattgtattgtatgcacggtaattgttttgtatgcactgtaccgtgagttca |
11650237 |
T |
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| Q |
259 |
t |
259 |
Q |
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| |
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| T |
11650236 |
t |
11650236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 21857260 - 21857370
Alignment:
| Q |
59 |
atgttcatcagagacatacagaaaattaatgagtagaaaaaccactatatctgcaaacctcagaatttgttgtgcaataattgagtgggttagttatatg |
158 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| |||| ||||||||| ||||| | |||||| |||||||| ||||||| || |||||||||||| |
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| T |
21857260 |
atgttcatcaggaagttacagaaaattaataagtaggaaaattactatatctacaaacttgagaattagttgtgcattaattgaatgtgttagttatatg |
21857359 |
T |
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| Q |
159 |
ctcatgaaaat |
169 |
Q |
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|||||||||| |
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| T |
21857360 |
atcatgaaaat |
21857370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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