View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0418_low_16 (Length: 251)
Name: NF0418_low_16
Description: NF0418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0418_low_16 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold1089 (1 HSPs) |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 14438543 - 14438764
Alignment:
| Q |
30 |
aaattgtactatgccatcccagccaggaaagaaccaataaaactgtagtttaatgtcaattaagtttcgaaacactggaaagcttttaaaactaatcctt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||||| |
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| T |
14438543 |
aaattgtactatgccatcccagccaggaaagaaccaataaaactgtagtttaatgtgaattaagttttgaaacatcggaaagcttttaaaaataatcctt |
14438642 |
T |
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| Q |
130 |
tctgcatcatatatggatagaaactcaacattcttaactacattataaggaacatctattgtaccgatttcagttctaacgaacctagccagtgacatgg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14438643 |
tctgcatcatatatggatagaaactcaacattcttaactacattataaggaacatctattgcaccgatttcagttctaacgaacctagccagtgacatgg |
14438742 |
T |
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| Q |
230 |
atttaaccctttctaatgcact |
251 |
Q |
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||||||||||||||||| |||| |
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| T |
14438743 |
atttaaccctttctaatacact |
14438764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 909 - 1116
Alignment:
| Q |
31 |
aattgtactatgccatcccagccaggaaagaaccaataaaactgtagtttaatgtcaattaagtttcgaaacactggaaagcttttaaaactaatccttt |
130 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| || |
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| T |
909 |
aattgtactatgccatcccagccatgaaagaagcaataaaactgtagtttaatgtgaattaagtttcgaaacaccggaaagcttttaaaaataatatctt |
1008 |
T |
|
| Q |
131 |
ctgcatcatatatggatagaaactcaacattcttaactacattataaggaacatctattgtaccgatttcagttctaacgaacctagccagtgacatgga |
230 |
Q |
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| T |
1009 |
ctgcttggtatacgcatagaaactcaacattattaactacattataaggaacatctattgcccgcatttcagctctaactaacttagccagggacaagga |
1108 |
T |
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| Q |
231 |
tttaaccc |
238 |
Q |
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|||||||| |
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| T |
1109 |
tttaaccc |
1116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 1635 - 1842
Alignment:
| Q |
31 |
aattgtactatgccatcccagccaggaaagaaccaataaaactgtagtttaatgtcaattaagtttcgaaacactggaaagcttttaaaactaatccttt |
130 |
Q |
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||||||| ||||||||||||||| ||||||| ||||||| || ||||||| ||||||||| |||||||||||| |||| | ||| || | ||| |
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| T |
1635 |
aattgtaatatgccatcccagccgtgaaagaagtcataaaaccataacttaatgtgaattaagttcggaaacactggaatgcttgtcaaattagcctttt |
1734 |
T |
|
| Q |
131 |
ctgcatcatatatggatagaaactcaacattcttaactacattataaggaacatctattgtaccgatttcagttctaacgaacctagccagtgacatgga |
230 |
Q |
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||| || |||| |||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||| |||||| ||| ||||||| |||| ||| |
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| T |
1735 |
gtgcgtctgctatgcatagaaactcaacattactaactacattacaaggaacatctattgcacccatttcagctctaactaacttagccagggacaagga |
1834 |
T |
|
| Q |
231 |
tttaaccc |
238 |
Q |
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|||||||| |
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| T |
1835 |
tttaaccc |
1842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 14308346 - 14308273
Alignment:
| Q |
43 |
ccatcccagccaggaaagaaccaataaaactgtagtttaatgtcaattaagtttcgaaacactggaaagctttt |
116 |
Q |
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|||||||||||| |||||| ||| ||| ||||||||||||| ||||||||||||||||| || || |||||| |
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| T |
14308346 |
ccatcccagccacgaaagatggaattaaattgtagtttaatgtgaattaagtttcgaaacattgaaatgctttt |
14308273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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