View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0418_low_3 (Length: 447)
Name: NF0418_low_3
Description: NF0418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0418_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 37698132 - 37697725
Alignment:
| Q |
1 |
atttttatacgctccttcatgttagatgtaactctttattcagcatcctgaaagcaacaggtaactcctcactcaaatggatcaatgtgtacaaactctc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37698132 |
atttttatacgctccatcatgttagatgtaactctttattcagcatcctgaaagcaacaggtaactcctcactcaaatggatcaatgtgtacaaactctc |
37698033 |
T |
|
| Q |
101 |
tacctttcctaaaagtaaattagttcatctcaccactaaatcatctannnnnnnatatgcctatatatatgtcccaacagcaacaagcaaatgaatagaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37698032 |
tacctttcctaaaagtaaattagttcatctcaccactaaatcatctatttttttatatgcctatatatatgtcccaacagcaacaagcaaatgaatagaa |
37697933 |
T |
|
| Q |
201 |
gaacaagatgatagcatcaaccatgcaacacttcctctcatgcatactacttctcttaatcataaccacacaacgtttcatcataccttcactctccgaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37697932 |
gaacaagatgatagcatcaaccatgcaacacttcctctcatgcatactacttctcttaatcataaccacacaacgcttcatcataccttcactctccgaa |
37697833 |
T |
|
| Q |
301 |
aaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgattgct |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37697832 |
aaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgactgct |
37697733 |
T |
|
| Q |
401 |
gcaacgac |
408 |
Q |
| |
|
|||||||| |
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|
| T |
37697732 |
gcaacgac |
37697725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 37993702 - 37993802
Alignment:
| Q |
281 |
tcataccttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatggga |
380 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||| |||||||||| || || | | |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37993702 |
tcattccttcactctcagaacaatgcaatccacatgacaaaaaaaccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcatggga |
37993801 |
T |
|
| Q |
381 |
t |
381 |
Q |
| |
|
| |
|
|
| T |
37993802 |
t |
37993802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 388
Target Start/End: Original strand, 38013229 - 38013336
Alignment:
| Q |
281 |
tcataccttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatggga |
380 |
Q |
| |
|
|||| ||||||| ||| ||||| ||||| | | |||||||| | || ||||||||||||||||||||||||||||||| | | |||||||||||||||| |
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|
| T |
38013229 |
tcattccttcacactcagaaaactgcaacccagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatggga |
38013328 |
T |
|
| Q |
381 |
tccaaaca |
388 |
Q |
| |
|
|||||||| |
|
|
| T |
38013329 |
tccaaaca |
38013336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 37989519 - 37989616
Alignment:
| Q |
288 |
ttcactctccgaaaaatgcaatcaacatgacaaagaagccttactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
385 |
Q |
| |
|
||||| ||| ||||| ||||| | | |||||||| | || |||||||||| || ||||||||||||||||| | | ||||||||||||||||||||| |
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|
| T |
37989519 |
ttcacactcagaaaactgcaacccagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaa |
37989616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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