View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0418_low_6 (Length: 386)
Name: NF0418_low_6
Description: NF0418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0418_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 28725599 - 28725385
Alignment:
| Q |
30 |
taaacaaatatagagacaatgcttacatttaagttcctccatattagaataacctcaaatactaatcgattattctaaatctaaaagaagcaagcaatta |
129 |
Q |
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| T |
28725599 |
taaacaaatatagagacaatgcttacatttaagttcctccatattagaataacctcaaatactaatcgattattctaaatctaaaagaagcaagcaatta |
28725500 |
T |
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| Q |
130 |
attctacaaagtaagccatatatcttcaccagaaaataagattacttgttgaacaaacatcgtctccattcaatgatgttgtagatagttaatgagttga |
229 |
Q |
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| T |
28725499 |
attctacaaagtaagcc----atcttcaccagaaaataagattacttgttgaacaaacatcgtctccattcaatgatgttgtagatagttaatgagttga |
28725404 |
T |
|
| Q |
230 |
agataattgacccacctga |
248 |
Q |
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| T |
28725403 |
agataattgacccacctga |
28725385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 28728005 - 28727873
Alignment:
| Q |
111 |
taaaagaagcaagcaattaattctacaaagtaagccatatatcttcaccagaaaataagatt-acttgttgaacaaacatcgtctccattcaatgatgtt |
209 |
Q |
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| T |
28728005 |
taaaagaagcaagtaattaattctataaagtaagcc----atcttcaacagtaaataagattaaattgttaaacaatcatcgtctccattcaaagatgtt |
28727910 |
T |
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| Q |
210 |
gtagatagttaatgagttgaagataattgacccacctga |
248 |
Q |
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| T |
28727909 |
ggagatagtt--tgagttgaagatgattgactcacctga |
28727873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 28725292 - 28725234
Alignment:
| Q |
321 |
tacaaagatctttgtacaaagacttacatttgttttttgattaatccttgttcatctca |
379 |
Q |
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| T |
28725292 |
tacaaagatctttgtacaaagacttacatttgttttttgattaatccttgttcttctca |
28725234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 28734221 - 28734087
Alignment:
| Q |
111 |
taaaagaagcaagcaattaattctacaaa--gtaagccatatatcttcaccagaaaataagattac-ttgttgaacaaacatcgtctccattcaatgatg |
207 |
Q |
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||||||||||||| ||||||||||| ||| ||||||||| ||||| ||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| |
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| T |
28734221 |
taaaagaagcaagtaattaattctataaaaagtaagccat----cttcaacagtaaataagattaaattgttaaacaatcatcgtctccattcaataatg |
28734126 |
T |
|
| Q |
208 |
ttgtagatagttaatgagttgaagataattgacccacctga |
248 |
Q |
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||||||||||| |||| ||||||| |||||| ||||||| |
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| T |
28734125 |
ctgtagatagtt--tgagctgaagatgattgactcacctga |
28734087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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