View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0419_high_11 (Length: 320)
Name: NF0419_high_11
Description: NF0419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0419_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 45513556 - 45513831
Alignment:
| Q |
30 |
gattcgtggtacgttagtggtgctatcagtacaacatgtattatagaatacatattcattcatgattgataaattgtttaaattatatgctatttgaatg |
129 |
Q |
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| T |
45513556 |
gattcgtggtacgttagtggtgctatcagtacaacatgtattatagaatacatattcattcatgattgataaattgtttaaattatatgctatttgaatg |
45513655 |
T |
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| Q |
130 |
ataggctatcaaattaaacgaaccgatagaatgtttactccgtatgaaaagtcaattcgtacactcaagataaggacataaattatgggtatagtcctga |
229 |
Q |
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| T |
45513656 |
ataggctatcaaattaaacgaaccgatagaatgtttactccgtatgaaaagtcaattcgtacactcaagataaggacataaattatgggtatagtcctga |
45513755 |
T |
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| Q |
230 |
aatatatatttgatttaatggtagtagtagtaacatgcaagtacctaacttgtctgattgacctagattgttcatc |
305 |
Q |
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| T |
45513756 |
aatatatatttgatttaatggtagtagtagtaacatgcaagtacctaacttgtctgattgacctagattgttcatc |
45513831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 305
Target Start/End: Original strand, 45507880 - 45508012
Alignment:
| Q |
171 |
gtatgaaaagtcaattcgtacactcaagataaggacataaattatgggtatagtcctgaaatatatatttgatttaatggtagtagtagtaacatgcaag |
270 |
Q |
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| T |
45507880 |
gtatgagaagtcaattcgtacactcatgataaggacgtaaattatgggtatagtgcataaatatttgatttatttaatg---gtagtagtaacatgcaac |
45507976 |
T |
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| Q |
271 |
tacctaacttgtctgat-tgacctagattgttcatc |
305 |
Q |
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| T |
45507977 |
tacctaacttgcctgctgtgacctataatgttcatc |
45508012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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