View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0419_high_2 (Length: 421)

Name: NF0419_high_2
Description: NF0419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0419_high_2
NF0419_high_2
[»] chr1 (25 HSPs)
chr1 (16-392)||(43207152-43207529)
chr1 (29-78)||(17470477-17470526)
chr1 (32-75)||(50811920-50811963)
chr1 (32-78)||(2435921-2435967)
chr1 (32-78)||(2436027-2436073)
chr1 (32-78)||(6983943-6983989)
chr1 (32-78)||(10378859-10378905)
chr1 (32-78)||(46859049-46859095)
chr1 (32-77)||(52910196-52910241)
chr1 (35-78)||(25554859-25554902)
chr1 (37-76)||(31442516-31442555)
chr1 (32-71)||(35019215-35019254)
chr1 (32-78)||(6358112-6358158)
chr1 (32-78)||(22327077-22327123)
chr1 (32-78)||(34679353-34679399)
chr1 (32-73)||(18724679-18724720)
chr1 (32-77)||(19701549-19701594)
chr1 (32-77)||(44485243-44485288)
chr1 (32-73)||(49546041-49546082)
chr1 (37-72)||(27136791-27136826)
chr1 (33-75)||(50760361-50760403)
chr1 (32-69)||(28894665-28894702)
chr1 (44-76)||(15511297-15511329)
chr1 (32-68)||(20036208-20036244)
chr1 (32-60)||(35117902-35117930)
[»] chr8 (6 HSPs)
chr8 (32-78)||(44781640-44781686)
chr8 (32-78)||(14018103-14018149)
chr8 (32-78)||(42083833-42083879)
chr8 (37-80)||(44742658-44742701)
chr8 (32-68)||(26457680-26457716)
chr8 (32-72)||(30962907-30962947)
[»] chr3 (13 HSPs)
chr3 (32-77)||(45620963-45621008)
chr3 (32-77)||(26573105-26573150)
chr3 (32-75)||(25944449-25944492)
chr3 (32-78)||(34420778-34420824)
chr3 (33-78)||(35417893-35417938)
chr3 (32-79)||(829576-829623)
chr3 (32-77)||(43956594-43956639)
chr3 (38-78)||(44403696-44403736)
chr3 (34-69)||(22609752-22609787)
chr3 (35-78)||(55400975-55401018)
chr3 (32-74)||(45948975-45949017)
chr3 (32-78)||(53062015-53062061)
chr3 (35-75)||(21330384-21330424)
[»] chr2 (10 HSPs)
chr2 (32-76)||(4516485-4516529)
chr2 (32-75)||(99397-99440)
chr2 (32-78)||(35010502-35010548)
chr2 (32-77)||(44521507-44521552)
chr2 (35-74)||(35017776-35017815)
chr2 (32-78)||(22890941-22890987)
chr2 (44-78)||(15296555-15296589)
chr2 (32-78)||(29420023-29420069)
chr2 (32-68)||(21377207-21377243)
chr2 (46-78)||(31821486-31821518)
[»] chr4 (19 HSPs)
chr4 (32-79)||(51420527-51420574)
chr4 (32-78)||(36589699-36589745)
chr4 (32-78)||(47441664-47441710)
chr4 (32-78)||(50856370-50856416)
chr4 (32-78)||(54966976-54967022)
chr4 (32-77)||(20908772-20908817)
chr4 (33-76)||(25343144-25343187)
chr4 (32-78)||(49938724-49938771)
chr4 (32-78)||(487269-487315)
chr4 (32-72)||(12257727-12257767)
chr4 (32-71)||(49938572-49938612)
chr4 (32-79)||(23580342-23580389)
chr4 (32-78)||(30496454-30496501)
chr4 (47-78)||(32629414-32629445)
chr4 (32-78)||(3580970-3581016)
chr4 (32-78)||(54175019-54175064)
chr4 (32-70)||(54640473-54640511)
chr4 (32-77)||(19027804-19027849)
chr4 (42-78)||(51865158-51865194)
[»] chr7 (12 HSPs)
chr7 (32-76)||(19265772-19265816)
chr7 (32-78)||(28362279-28362325)
chr7 (32-73)||(3469313-3469354)
chr7 (32-77)||(13805058-13805103)
chr7 (32-77)||(19266406-19266451)
chr7 (35-77)||(23419811-23419853)
chr7 (32-77)||(48123618-48123663)
chr7 (34-70)||(42102021-42102057)
chr7 (37-77)||(43852006-43852046)
chr7 (32-65)||(21220104-21220137)
chr7 (39-75)||(4000826-4000862)
chr7 (42-70)||(36267903-36267931)
[»] chr6 (4 HSPs)
chr6 (32-78)||(12889381-12889427)
chr6 (32-78)||(13905113-13905159)
chr6 (32-78)||(7947506-7947552)
chr6 (32-73)||(11849015-11849056)
[»] chr5 (12 HSPs)
chr5 (32-78)||(39301078-39301124)
chr5 (35-79)||(209064-209108)
chr5 (32-79)||(43574551-43574598)
chr5 (32-78)||(10634280-10634326)
chr5 (36-78)||(39079904-39079946)
chr5 (35-78)||(15173824-15173867)
chr5 (34-69)||(23974744-23974779)
chr5 (33-80)||(31694243-31694290)
chr5 (32-78)||(3771296-3771342)
chr5 (35-73)||(19143079-19143117)
chr5 (32-77)||(24903830-24903875)
chr5 (34-81)||(2838729-2838777)
[»] scaffold0057 (1 HSPs)
scaffold0057 (32-78)||(47017-47063)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 43207529 - 43207152
Alignment:
Q  16 cctgtgagtgtgtccattcagtcacgtgacaacaactttaccgttgcgccaaggctcccccttgaatactaaatagaataaccatgcatttttagttcac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43207529 cctgtgagtgtgtccattcagtcacgtgacaacaactttaccgttgcgccaaggctcccccttgaatactaaatagaataaccatgcatttttagttcac 43207430  T
Q  116 gaatgaatgcaacacaatcaaactagggctattcaaaaacaccaaaaatctgaactgaactgctaaactgaatcgaattagcactatnnnnnnnctaaag 215  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||    
T  43207429 gaatgaatgctacacaatcaaactagggctattcaaaaacaccaaaaatctgaactgaactgctaaactgaatcgaattagcactataaaaaaactgaag 43207330  T
Q  216 cttttcgtacagttcctgaactgaacaggaattttaaacaaagttcgctaaggatagaaatttattcattaatttcgcatattgtcgcgaagcacctaaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43207329 cttttcgtacagttcctgaactgaacaggaattttaaacaaagttcgctaaggatagaaatttattcattaatttcgcatattgtcgcgaagcacctaaa 43207230  T
Q  316 gcttacatcctagataaaat-aattaaattacattgctgagagttattgagatgttgcgaaggcctttaaggttcttg 392  Q
    |||||||||||||||||||| || || ||| |   |||||||||||||||||||||||||||||||||||||||||||    
T  43207229 gcttacatcctagataaaataaactacattgctgagctgagagttattgagatgttgcgaaggcctttaaggttcttg 43207152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 17470477 - 17470526
Alignment:
Q  29 ccattcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17470477 ccattcagtcacgtgacaacaactttaccgttgcaccaaggctccccctt 17470526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 50811963 - 50811920
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcccc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  50811963 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcccc 50811920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 2435921 - 2435967
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  2435921 ttcagtcacgtgacaacaactttaccgttgcgccaaggccccccctt 2435967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 2436027 - 2436073
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  2436027 ttcagtcacgtgacaacaactttaccgttgcaccaaggccccccctt 2436073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 6983943 - 6983989
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||    
T  6983943 ttcagtcacgtgacaacaactttaccattgcgccaaggctctccctt 6983989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 10378859 - 10378905
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  10378859 ttcagtcacgtgacaacaactttaccgttgcaccaaggcttcccctt 10378905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 46859095 - 46859049
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||    
T  46859095 ttcagtcaagtgacaacaactttactgttgcgccaaggctccccctt 46859049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 52910241 - 52910196
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  52910241 ttcagtcacatgacaacaactttaccgttgcaccaaggctccccct 52910196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 25554859 - 25554902
Alignment:
Q  35 agtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  25554859 agtcacgtgacaacaactttaccattgcgccaaggctcctcctt 25554902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 31442516 - 31442555
Alignment:
Q  37 tcacgtgacaacaactttaccgttgcgccaaggctccccc 76  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  31442516 tcacatgacaacaactttaccgttgcgccaaggctccccc 31442555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 35019254 - 35019215
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggct 71  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  35019254 ttcagtcatgtgacaacaactttaccgttgcgccaaggct 35019215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 6358158 - 6358112
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||||    
T  6358158 ttcagtcatgtgaaaacaaatttaccgttgcgccaaggctccccctt 6358112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 22327123 - 22327077
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  22327123 ttcagtcacatgacaacaactttgccgttgcgccaaggctccacctt 22327077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 34679353 - 34679399
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  34679353 ttcagtcacatgacaataactttaccgttgcgccaaagctccccctt 34679399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 18724679 - 18724720
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcc 73  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  18724679 ttcagtcacatgacaacaactttaccgttgcgccaagtctcc 18724720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 19701594 - 19701549
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||    
T  19701594 ttcagtcacacgacaacaactttactgttgcgccaaggctccccct 19701549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 44485243 - 44485288
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    |||| |||| ||||||||||||||| ||||||||||||||||||||    
T  44485243 ttcaatcacatgacaacaactttactgttgcgccaaggctccccct 44485288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 49546041 - 49546082
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcc 73  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  49546041 ttcagccacgtgacaacaactttaccgttgcgccaaagctcc 49546082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 27136791 - 27136826
Alignment:
Q  37 tcacgtgacaacaactttaccgttgcgccaaggctc 72  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27136791 tcacgtgacaacaactttaccgttgtgccaaggctc 27136826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 50760361 - 50760403
Alignment:
Q  33 tcagtcacgtgacaacaactttaccgttgcgccaaggctcccc 75  Q
    |||||||| ||||||| |||||||| |||||||||||||||||    
T  50760361 tcagtcacatgacaactactttacctttgcgccaaggctcccc 50760403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 28894665 - 28894702
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaagg 69  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  28894665 ttcagtcacatgacaacaactttactgttgcgccaagg 28894702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 15511297 - 15511329
Alignment:
Q  44 acaacaactttaccgttgcgccaaggctccccc 76  Q
    |||||||||||||| ||||||||||||||||||    
T  15511297 acaacaactttaccattgcgccaaggctccccc 15511329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 20036244 - 20036208
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaag 68  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  20036244 ttcagtcacatgacaacaactttaccattgcgccaag 20036208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 35117902 - 35117930
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgtt 60  Q
    |||||||||||||||||||||||||||||    
T  35117902 ttcagtcacgtgacaacaactttaccgtt 35117930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 44781640 - 44781686
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44781640 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 44781686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 14018103 - 14018149
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  14018103 ttcaatcacgtgacaacaacattaccgttgcgccaaggctccccctt 14018149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 42083833 - 42083879
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  42083833 ttcagtcacgtgacaacaattttaccgttgcgccaaggctctccctt 42083879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 44742658 - 44742701
Alignment:
Q  37 tcacgtgacaacaactttaccgttgcgccaaggctcccccttga 80  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||    
T  44742658 tcacgcgacaacaactttaccgttgcaccaaggttcccccttga 44742701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 26457716 - 26457680
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaag 68  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  26457716 ttcaatcacgcgacaacaactttaccgttgcgccaag 26457680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 30962907 - 30962947
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctc 72  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  30962907 ttcaatcacatgacaacaacttttccgttgcgccaaggctc 30962947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 45620963 - 45621008
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45620963 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 45621008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 26573150 - 26573105
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  26573150 ttcagtcacgtgacaacaactttaccgttgcgccaagggtccccct 26573105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 25944492 - 25944449
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcccc 75  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  25944492 ttcagtcacgtgacaacaactttactgttgcgccaaggctcccc 25944449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 34420778 - 34420824
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  34420778 ttcagtcacgtgacaacaactttactgttgcgccaaggccccccctt 34420824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 35417938 - 35417893
Alignment:
Q  33 tcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||    
T  35417938 tcagtcacatgataacaactttaccgttgcgccaaggctccccctt 35417893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 829576 - 829623
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcccccttg 79  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||    
T  829576 ttcaatcacgtgacaacaactttaccgttgcgccaaaactcccccttg 829623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 43956594 - 43956639
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    |||||||| || |||||||||||||||||||||||||| |||||||    
T  43956594 ttcagtcaagtaacaacaactttaccgttgcgccaaggttccccct 43956639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 44403696 - 44403736
Alignment:
Q  38 cacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  44403696 cacgtgacaataactttaccgttgcaccaaggctccccctt 44403736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 22609787 - 22609752
Alignment:
Q  34 cagtcacgtgacaacaactttaccgttgcgccaagg 69  Q
    ||||||| ||||||||||||||||||||||||||||    
T  22609787 cagtcacatgacaacaactttaccgttgcgccaagg 22609752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 55401018 - 55400975
Alignment:
Q  35 agtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||    
T  55401018 agtcacatgacaacaactttaccgttgtgccaagggtccccctt 55400975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 45948975 - 45949017
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccc 74  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||    
T  45948975 ttcagtcacatgaaaacaacttcaccgttgcgccaaggctccc 45949017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 53062061 - 53062015
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| ||||||||||||||||| ||||||||  |||||||||    
T  53062061 ttcagtcacatgacaacaactttaccgatgcgccaatcctccccctt 53062015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 21330384 - 21330424
Alignment:
Q  35 agtcacgtgacaacaactttaccgttgcgccaaggctcccc 75  Q
    |||||| ||||||| |||||||| |||||||||||||||||    
T  21330384 agtcacatgacaaccactttaccattgcgccaaggctcccc 21330424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 4516485 - 4516529
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4516485 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccc 4516529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 99397 - 99440
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcccc 75  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  99397 ttcagtcacgtgacaacaactttactgttgcgccaaggctcccc 99440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 35010548 - 35010502
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  35010548 ttcagtcacatgacaacaactttaccgttgcaccaaggctccccctt 35010502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 44521507 - 44521552
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  44521507 ttcagtcacgtgataacaactttaccgttccgccaaggctccccct 44521552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 35017815 - 35017776
Alignment:
Q  35 agtcacgtgacaacaactttaccgttgcgccaaggctccc 74  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  35017815 agtcacatgacaacaactttaccgttgcgccaaggctccc 35017776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 22890987 - 22890941
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||    
T  22890987 ttcagtcacgtgacaataactttaccgttacgtcaaggctccccctt 22890941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 15296555 - 15296589
Alignment:
Q  44 acaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||||||| |||||||||||||||||    
T  15296555 acaacaactttaccgttccgccaaggctccccctt 15296589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 29420023 - 29420069
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||| |||||||||||||||||||||  ||||| |||||||||    
T  29420023 ttcagtcatgtgacaacaactttaccgttggaccaagactccccctt 29420069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 21377207 - 21377243
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaag 68  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  21377207 ttcagtcacatgacaacaactttaccgttgctccaag 21377243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 31821486 - 31821518
Alignment:
Q  46 aacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||| |||||||||||||||||||||||||    
T  31821486 aacaactataccgttgcgccaaggctccccctt 31821518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 51420574 - 51420527
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcccccttg 79  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  51420574 ttcagtcacgtgacaacaacttcaccgttgcgccaaggctcccccttg 51420527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 36589745 - 36589699
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  36589745 ttcagtcatgtgacatcaactttaccgttgcgccaaggctccccctt 36589699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 47441664 - 47441710
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  47441664 ttcagtcacgtgacaacaactttaccgttgcgccaaagctcctcctt 47441710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 50856370 - 50856416
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  50856370 ttcaatcatgtgacaacaactttaccgttgcgccaaggctccccctt 50856416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 54967022 - 54966976
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  54967022 ttcagtcacatgacaacaactttaccgttgcgccaaggttccccctt 54966976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 20908772 - 20908817
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||    
T  20908772 ttcagtcacatgacaacaactttaccgttgtgccaaggctccccct 20908817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 25343187 - 25343144
Alignment:
Q  33 tcagtcacgtgacaacaactttaccgttgcgccaaggctccccc 76  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  25343187 tcagtcacgtgacaacaactttaccattgcgccaagcctccccc 25343144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 49938724 - 49938771
Alignment:
Q  32 ttcagtcacgtgacaacaac-tttaccgttgcgccaaggctccccctt 78  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  49938724 ttcagtcacgtgacaacaacttttaccgttgcgccagggctccccctt 49938771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 487269 - 487315
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  487269 ttcagtcacatgacaacaactttaccgttacgccaaggctcctcctt 487315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 12257727 - 12257767
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctc 72  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  12257727 ttcaatcacgtgacaacaactttaccgttgcgtcaaggctc 12257767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 49938572 - 49938612
Alignment:
Q  32 ttcagtcacgtgacaacaac-tttaccgttgcgccaaggct 71  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  49938572 ttcagtcacgtgacaacaacttttaccgttgcgccaaggct 49938612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 23580342 - 23580389
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcccccttg 79  Q
    |||||||||||||||||||||||| ||||||  |||||||| ||||||    
T  23580342 ttcagtcacgtgacaacaactttagcgttgcatcaaggctctcccttg 23580389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 30496454 - 30496501
Alignment:
Q  32 ttcagtcacgtgacaacaac-tttaccgttgcgccaaggctccccctt 78  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  30496454 ttcagtcacgtgacaacaacttttacagttgcgccaagtctccccctt 30496501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 32629414 - 32629445
Alignment:
Q  47 acaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||||||||||||||||||||||    
T  32629414 acaactttaccgttgcgccaaggctccccctt 32629445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 3580970 - 3581016
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| ||||||||||||||| |  ||||||||||||||||||    
T  3580970 ttcagtcacatgacaacaactttactgccgcgccaaggctccccctt 3581016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 54175064 - 54175019
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  54175064 ttcagtcacatgacaacaactt-atcgttgcgccaaggctccccctt 54175019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 54640473 - 54640511
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggc 70  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  54640473 ttcagccacgtgacaacaattttaccgttgcgccaaggc 54640511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 19027849 - 19027804
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    ||||||||||||||||||||| |||| ||||| |||| ||||||||    
T  19027849 ttcagtcacgtgacaacaactctaccattgcgtcaagactccccct 19027804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 51865158 - 51865194
Alignment:
Q  42 tgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  51865158 tgacagcaactttaccgttgcaccaaggctccccctt 51865194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 19265816 - 19265772
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccc 76  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  19265816 ttcagtcacgtgacaacaactttaccgttgcgccaatgctccccc 19265772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 28362279 - 28362325
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  28362279 ttcagccacatgacaacaactttaccgttgcgccaaggctccccctt 28362325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 3469313 - 3469354
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcc 73  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  3469313 ttcagtcacatgacaacaactttaccgttgcgccaaggctcc 3469354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 13805103 - 13805058
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||    
T  13805103 ttcagtcacatgacaacaactttaccattgcgccaaggctccccct 13805058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 19266451 - 19266406
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  19266451 ttcagtcacatgacaacaactttaccgttgcaccaaggctccccct 19266406  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 23419811 - 23419853
Alignment:
Q  35 agtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  23419811 agtcacatgacagcaactttaccgttgcgccaaggctccccct 23419853  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 48123618 - 48123663
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  48123618 ttcagacacatgataacaactttaccgttgcgccaaggctccccct 48123663  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 42102021 - 42102057
Alignment:
Q  34 cagtcacgtgacaacaactttaccgttgcgccaaggc 70  Q
    |||||||||||||||||||||||||||| ||||||||    
T  42102021 cagtcacgtgacaacaactttaccgttgtgccaaggc 42102057  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 43852046 - 43852006
Alignment:
Q  37 tcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  43852046 tcacatgacaacaactttaccgttgcaccaaggctccccct 43852006  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 21220104 - 21220137
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgcc 65  Q
    |||||||||||||||||||||||||| |||||||    
T  21220104 ttcagtcacgtgacaacaactttaccattgcgcc 21220137  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 4000826 - 4000862
Alignment:
Q  39 acgtgacaacaactttaccgttgcgccaaggctcccc 75  Q
    |||||||||||| |||| |||||||||||||||||||    
T  4000826 acgtgacaacaattttatcgttgcgccaaggctcccc 4000862  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 36267903 - 36267931
Alignment:
Q  42 tgacaacaactttaccgttgcgccaaggc 70  Q
    |||||||||||||||||||||||||||||    
T  36267903 tgacaacaactttaccgttgcgccaaggc 36267931  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 12889427 - 12889381
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  12889427 ttcactcacgtgacaacaactttaccgttgtgccaaggctccccctt 12889381  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 13905113 - 13905159
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  13905113 ttcagtcacatgacaacaactttaccgttgcgccaaggttccccctt 13905159  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 7947506 - 7947552
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||  ||| |||||||||||||||||||||||||||||||    
T  7947506 ttcagtcacgcaacaccaactttaccgttgcgccaaggctccccctt 7947552  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 11849056 - 11849015
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcc 73  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  11849056 ttcagtcacgtgacaataactttaccgttgcgctaaggctcc 11849015  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 39301124 - 39301078
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    |||||| || |||||||||||||||||||||||||||||||||||||    
T  39301124 ttcagtaacatgacaacaactttaccgttgcgccaaggctccccctt 39301078  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 209064 - 209108
Alignment:
Q  35 agtcacgtgacaacaactttaccgttgcgccaaggctcccccttg 79  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||    
T  209064 agtcacatgacaacaactttaccgctgcgccaaggctcccccttg 209108  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 43574598 - 43574551
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctcccccttg 79  Q
    |||||||||||||||||||||||| | ||||||||||||| |||||||    
T  43574598 ttcagtcacgtgacaacaactttatcattgcgccaaggctaccccttg 43574551  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 10634280 - 10634326
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  10634280 ttcagtcacttgacaacaacttcaccgttgcgccaaggctcctcctt 10634326  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 39079904 - 39079946
Alignment:
Q  36 gtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  39079904 gtcacatgacaacaactttaccgttgcgccaaggctcaccctt 39079946  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 15173824 - 15173867
Alignment:
Q  35 agtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||||||||||||||| || ||||||||| |||||    
T  15173824 agtcacgtgacaacaactttaccgtcgctccaaggctcaccctt 15173867  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 23974779 - 23974744
Alignment:
Q  34 cagtcacgtgacaacaactttaccgttgcgccaagg 69  Q
    ||||||| ||||||||||||||||||||||||||||    
T  23974779 cagtcacatgacaacaactttaccgttgcgccaagg 23974744  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 31694243 - 31694290
Alignment:
Q  33 tcagtcacgtgacaacaactttaccgttgcgccaaggctcccccttga 80  Q
    |||||||||||||||||||||||| ||||||||||  |||||| ||||    
T  31694243 tcagtcacgtgacaacaactttactgttgcgccaaaactcccctttga 31694290  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 3771342 - 3771296
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||||||| |||||| |||| |||||||||| ||||||||||    
T  3771342 ttcagtcacgtgagaacaacattactgttgcgccaatgctccccctt 3771296  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 19143079 - 19143117
Alignment:
Q  35 agtcacgtgacaacaactttaccgttgcgccaaggctcc 73  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  19143079 agtcacgtgacaacaattttaccattgcgccaaggctcc 19143117  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 24903830 - 24903875
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 77  Q
    ||||||||||||||||||| |||||||||| | ||| |||||||||    
T  24903830 ttcagtcacgtgacaacaaatttaccgttgtgtcaaagctccccct 24903875  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 2838777 - 2838729
Alignment:
Q  34 cagtcacgtgacaacaactttacc-gttgcgccaaggctcccccttgaa 81  Q
    ||||||| |||||||||||||||| |||||||||||| | |||||||||    
T  2838777 cagtcacatgacaacaactttaccggttgcgccaaggttaccccttgaa 2838729  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 47017 - 47063
Alignment:
Q  32 ttcagtcacgtgacaacaactttaccgttgcgccaaggctccccctt 78  Q
    ||||||||| |||||||||||||||  |||||||||||||| |||||    
T  47017 ttcagtcacctgacaacaactttactattgcgccaaggctctccctt 47063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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