View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0419_high_22 (Length: 258)
Name: NF0419_high_22
Description: NF0419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0419_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 10202102 - 10201874
Alignment:
| Q |
30 |
acaacgacattaaaatctctttttccttagattgtactccacttttatcaatttgttcattttctaatttagacgacaacaaaaatctaatgattgtcaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10202102 |
acaacgacattaaaatctctttttccttagattgtactccacttttatcaatttgttcattttctaatttagacgacaacaaaaatctaatgattgtcaa |
10202003 |
T |
|
| Q |
130 |
gttaattcgaggacattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctcc-nnnnnnngtgttgcaacattttgaatggtttca |
228 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10202002 |
gttaattcgagggcattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctccaaaaaaaagtgttgcaacattttgaatggtttca |
10201903 |
T |
|
| Q |
229 |
gattctattagttccgagaaaccaaatga |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10201902 |
gattctattagttccgagaaaccaaatga |
10201874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 51741230 - 51741139
Alignment:
| Q |
104 |
gacaacaaaaatctaatgattgtcaagttaattcgaggacattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctcc |
195 |
Q |
| |
|
||||| |||||||| |||||||||| ||||| ||||| ||||||||||| | |||||||||||| | |||||| || || ||||| ||||| |
|
|
| T |
51741230 |
gacaaaaaaaatctgatgattgtcagattaatgcgagggcattttgaaattcttaggctccaagctatagcctcacgatcgtccgggcctcc |
51741139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 306 times since January 2019
Visitors: 3263