View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0419_high_4 (Length: 409)
Name: NF0419_high_4
Description: NF0419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0419_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 58 - 409
Target Start/End: Complemental strand, 52824046 - 52823696
Alignment:
| Q |
58 |
aaacaaaacctcttctttcctacaaacaaagaaacaaatccaatgtatcattattataataaattcatgagttgatatagttaaatgaaattaatactat |
157 |
Q |
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| T |
52824046 |
aaacaaaacctcttctttcctacaaacaaagaaacaaatccaatgtatcattattataataaattcatgagttgatatagttaaatgaaattaatactat |
52823947 |
T |
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| Q |
158 |
atagtctctttctatatataacaagtttagtatgcataaatattggagagaattacgaggcaaatatcgcagagagggaaatggttgggagaattagggt |
257 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52823946 |
atagtctctttctatatataacaagattagtatacataaatattggagagaattacgaggcaaatatcgcagagagggaaatggttgggagaattagggt |
52823847 |
T |
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| Q |
258 |
ggtcgagagagaagcgacggtgtttggaggcgagtttgttagcatggtggacacggtgggtcgcaggtggagcataaggcagcttcatcggcggtgcaaa |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
52823846 |
ggtcgagagagaagcgacggtgtttggaggcgagtttgttagcatggtggacacggt-ggtcgcaggtggagcataaggcagcttcatcggcggtgcaga |
52823748 |
T |
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| Q |
358 |
ataaagaagcctgccgtttgttacagacgtcgcactggatcttcataatatc |
409 |
Q |
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| T |
52823747 |
ataaagaagcctgccgtttgttacagacgtcgcactggatcttcataatatc |
52823696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 53982036 - 53982008
Alignment:
| Q |
30 |
ctaagggtgtctatgtatcattactcata |
58 |
Q |
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| T |
53982036 |
ctaagggtgtctatgtatcattactcata |
53982008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 34012371 - 34012406
Alignment:
| Q |
30 |
ctaagggtgtctatgtatcattactcataaacaaaa |
65 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
34012371 |
ctaagggtgtctatgtatcattactcataaaaaaaa |
34012406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 33149713 - 33149748
Alignment:
| Q |
30 |
ctaagggtgtctatgtatcattactcataaacaaaa |
65 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
33149713 |
ctaagggtgtctatgtatcattactcataaaaaaaa |
33149748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 40145432 - 40145404
Alignment:
| Q |
30 |
ctaagggtgtctatgtatcattactcata |
58 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40145432 |
ctaagggtgtctatgtatcattactcata |
40145404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 28381730 - 28381760
Alignment:
| Q |
30 |
ctaagggtgtctatgtatcattactcataaa |
60 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28381730 |
ctaagggtgtctatgtatcattactcataaa |
28381760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 28863614 - 28863642
Alignment:
| Q |
32 |
aagggtgtctatgtatcattactcataaa |
60 |
Q |
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| T |
28863614 |
aagggtgtctatgtatcattactcataaa |
28863642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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