View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0419_low_11 (Length: 352)
Name: NF0419_low_11
Description: NF0419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0419_low_11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 352
Target Start/End: Original strand, 45728649 - 45728975
Alignment:
| Q |
30 |
gcttgcttgagccttgagcttcactaaacgactggataacagacggccatttccttcaaccat-caatatgggaatccacccacattatccacacggaac |
128 |
Q |
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| T |
45728649 |
gcttgcttgagccttgagcttcactaaacgactggataacagacggccatttccttcaaccattcaatatgggaatccacccacattatccacacggaac |
45728748 |
T |
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| Q |
129 |
tccaattatttctactgatcaaagtcgaagcaagcatattttcttttt-ggttacaatgcgaaaaggaagcaagcatatttgaaatttcggattcttata |
227 |
Q |
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| T |
45728749 |
tccaattatttctactgatcaaagtcgaagcaagcatttttttttttttggttacaatgcaaaaaggaagcaagcatatttgaaatttcagattcttata |
45728848 |
T |
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| Q |
228 |
--tttgattgcattaactgtattccttattacaaattgtttaaactttcagatgaaacttcattatcatattagtataattatactaagaaacacaagca |
325 |
Q |
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| T |
45728849 |
tatttgattgcatcaactgtattccttattacaaattgtttaaaatttcagatgaaacttcattatcatattagtataattatcctaagaaacacaagca |
45728948 |
T |
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| Q |
326 |
ttgtatatgctagctcaacgtcattgc |
352 |
Q |
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| T |
45728949 |
ttgtatatgctagctcaacgtcattgc |
45728975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 45735044 - 45735108
Alignment:
| Q |
198 |
caagcatatttgaaatttcggattcttatatttgattgcattaactgtattccttattacaaatt |
262 |
Q |
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| T |
45735044 |
caagcatatttaaaattttagattcttatatttgattgtattagctgtatttcttattacaaatt |
45735108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 45734979 - 45735028
Alignment:
| Q |
53 |
ctaaacgactggataacagacggccatttccttcaacca-tcaatatggg |
101 |
Q |
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| T |
45734979 |
ctaaatgactggataacagacggccatttccttccaccattcaatatggg |
45735028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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