View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0419_low_2 (Length: 448)
Name: NF0419_low_2
Description: NF0419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0419_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 57 - 291
Target Start/End: Original strand, 24414094 - 24414321
Alignment:
| Q |
57 |
aacttcaatattacacgtgctttagttgctgttgtagaatcaacttccttgcaactaataattnnnnnnntaaggaatcggaatgaagaaaaacaatcaa |
156 |
Q |
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| T |
24414094 |
aacttcaatattagacgtgctttaattgctgttgtagaatcaactcccttgcaacaaaaaa-------aataaggaatacaaatgaagaaaaacaatcaa |
24414186 |
T |
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| Q |
157 |
ataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataacttcaataggatttaagaaatacgctccttcacaataggataaa |
256 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
24414187 |
ataagcaaatgaagacatataggtctggaaattggttcttgcctattcaccaataacttcaataggatttaagaaatatgttccttcacaataggataaa |
24414286 |
T |
|
| Q |
257 |
agacgggactgatttatctcaaatcaactaataat |
291 |
Q |
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| T |
24414287 |
agacgggactgatttatctcaaatcaactaataat |
24414321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 19024294 - 19024446
Alignment:
| Q |
54 |
ttgaacttcaatattacacgtgctttagttgctgttgtagaatcaacttccttgcaactaataattnnnnnnntaaggaatcggaatgaagaaaaacaat |
153 |
Q |
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| T |
19024294 |
ttgaacttcaatattacacatgctttagttgttgttgtagaatcaactcccttgcaacaaaaaa-------aataaggaatacaaatgaagaaaaacaat |
19024386 |
T |
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| Q |
154 |
caaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataac |
213 |
Q |
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| T |
19024387 |
caaataagcaaatgaagacatataggtctggaaatttattctttcctattcaccaataac |
19024446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 401
Target Start/End: Original strand, 30397397 - 30397438
Alignment:
| Q |
360 |
tgcaatataggttcgtctagaaaacattcctaagaaatacca |
401 |
Q |
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| T |
30397397 |
tgcaatataggttagtctagaaaacagtcttaagaaatacca |
30397438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 3698961 - 3698930
Alignment:
| Q |
30 |
cgttttcccttcctcaagctgcccttgaactt |
61 |
Q |
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| T |
3698961 |
cgttttcccttcctcaagctgcccttgaactt |
3698930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 48011422 - 48011384
Alignment:
| Q |
288 |
taatgtactttgattcccatgtcatattctctgcctcat |
326 |
Q |
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| T |
48011422 |
taatgtactttgattcccatgtcacatgctctgcctcat |
48011384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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