View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0419_low_6 (Length: 400)
Name: NF0419_low_6
Description: NF0419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0419_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 26341928 - 26341561
Alignment:
| Q |
1 |
tcaagaaatactgctcaggtcggacttaaaagtagtgatttctcaaataaatagggaatacaaggctatgggtcaaaagatgcaaagatatttgtgcctc |
100 |
Q |
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| T |
26341928 |
tcaagaaatactgctcaagtcggacttaaaagtagtgatttctcaaataaatagggaatacaaggctatgggtcaaaagatgcaaagatatttgtgcctc |
26341829 |
T |
|
| Q |
101 |
gttaaataaaccatctgaagattcaagttggtaaggctcagacacattccacgagagaataacctgaaggctgacagactctctaagatagcaagttcta |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| |
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| T |
26341828 |
gttaaataaatcatctgaagattcaagttggtaaggctcagacacattccacgagagaataacctaaaggctgacaaattctctaagatagcaagttcta |
26341729 |
T |
|
| Q |
201 |
aaaggaaaagtgaaaacaagatagttatacatgagactttgtcgaatcctatcttggatggtttcatagcagaggtctgcaaagaggacccccatggtat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26341728 |
aaaggaaaagtgaaaacaagatagttatacatgagactttgtcgaatcctatcctagatggtttcatagcagaggtctgcaaagaggaccaccatggtat |
26341629 |
T |
|
| Q |
301 |
aacgtggcttcctgcatcaaatgccaatcatgttctttctttgttattaagggacaactgtaccaaagagg |
371 |
Q |
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|| |||||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
26341628 |
aatgtggctgcctgcatcaaatgacaatcatgttct---ttttttattaagggacaactgtaccaaagagg |
26341561 |
T |
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